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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34231096	A-G	HOMO	INTERGENIC
SBS	Chr1	9775143	T-C	HOMO	INTERGENIC
SBS	Chr10	10006385	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g19950
SBS	Chr10	13083659	C-T	HET	INTRON
SBS	Chr11	28674252	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47452
SBS	Chr11	3473205	T-C	HET	INTRON
SBS	Chr11	5193634	C-G	HET	INTERGENIC
SBS	Chr11	931482	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02800
SBS	Chr12	10209312	G-T	HET	INTRON
SBS	Chr12	11362361	C-T	HET	INTERGENIC
SBS	Chr12	26789902	G-T	HET	INTERGENIC
SBS	Chr12	3858893	A-T	HET	INTRON
SBS	Chr12	8233157	C-A	HOMO	INTERGENIC
SBS	Chr2	11259620	T-A	HET	INTERGENIC
SBS	Chr2	29012840	C-T	HET	INTRON
SBS	Chr2	30277452	G-T	HET	INTRON
SBS	Chr3	32377468	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56820
SBS	Chr3	35791825	T-C	HET	INTRON
SBS	Chr3	36397051	A-C	HET	INTRON
SBS	Chr4	35063790	A-T	HOMO	INTERGENIC
SBS	Chr4	35299210	C-A	HET	INTRON
SBS	Chr4	6849419	A-T	HET	INTERGENIC
SBS	Chr5	4959302	A-T	HET	INTRON
SBS	Chr6	13494857	C-T	HOMO	INTERGENIC
SBS	Chr6	17728879	C-T	HOMO	INTERGENIC
SBS	Chr6	17728891	A-T	HOMO	INTERGENIC
SBS	Chr7	13903842	T-C	HOMO	INTERGENIC
SBS	Chr7	15614080	T-C	HOMO	INTERGENIC
SBS	Chr7	6894587	C-T	HOMO	INTERGENIC
SBS	Chr7	7834990	T-G	HET	INTERGENIC
SBS	Chr8	15190039	A-G	HET	INTRON
SBS	Chr8	19276580	C-T	HET	INTERGENIC
SBS	Chr8	21997279	G-A	HET	INTERGENIC
SBS	Chr8	23203311	T-G	HOMO	INTERGENIC
SBS	Chr8	26300723	C-A	HET	INTERGENIC
SBS	Chr8	27342496	A-G	HET	INTERGENIC
SBS	Chr8	3681494	G-A	HET	INTRON
SBS	Chr9	11872926	A-G	HET	INTRON
SBS	Chr9	12671540	C-G	HET	INTERGENIC
SBS	Chr9	17606675	A-T	HET	INTRON
SBS	Chr9	18575906	C-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	931322	931328	6
Deletion	Chr10	1363960	1363973	13
Deletion	Chr10	3217826	3217828	2
Deletion	Chr12	3345719	3345720	1
Deletion	Chr3	3466484	3466486	2
Deletion	Chr5	4783543	4783544	1
Deletion	Chr2	5445624	5445634	10	LOC_Os02g10350
Deletion	Chr3	7255641	7255642	1
Deletion	Chr5	8142309	8142319	10
Deletion	Chr3	10273043	10273046	3
Deletion	Chr12	10874444	10874446	2	LOC_Os12g18780
Deletion	Chr3	11420200	11420214	14	LOC_Os03g20200
Deletion	Chr9	11796182	11796190	8
Deletion	Chr4	13390823	13390889	66
Deletion	Chr8	13654261	13654262	1
Deletion	Chr9	13918600	13918657	57
Deletion	Chr1	15098184	15098186	2
Deletion	Chr6	16398361	16398375	14	LOC_Os06g28800
Deletion	Chr2	17707917	17707920	3	LOC_Os02g29760
Deletion	Chr8	18015717	18015738	21
Deletion	Chr10	18485554	18485555	1
Deletion	Chr6	22221355	22221359	4
Deletion	Chr6	22968375	22968376	1	LOC_Os06g38680
Deletion	Chr4	23183628	23183634	6
Deletion	Chr3	25200159	25200177	18
Deletion	Chr11	26544613	26544622	9
Deletion	Chr5	26651546	26651552	6	LOC_Os05g45980
Deletion	Chr1	26756644	26756653	9
Deletion	Chr4	27174001	27226000	52000	7
Deletion	Chr3	28480086	28480089	3
Deletion	Chr2	33516697	33516699	2
Deletion	Chr2	35039957	35039958	1	LOC_Os02g57190

Insertions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23079848	23079849	2
Insertion	Chr1	2580941	2580944	4
Insertion	Chr1	3254407	3254408	2
Insertion	Chr1	3376048	3376049	2
Insertion	Chr1	35770112	35770113	2
Insertion	Chr1	40542753	40542756	4
Insertion	Chr1	4620126	4620127	2
Insertion	Chr10	17838567	17838570	4
Insertion	Chr11	16764607	16764608	2
Insertion	Chr11	17692659	17692667	9
Insertion	Chr11	23208034	23208036	3
Insertion	Chr11	26129615	26129616	2
Insertion	Chr11	4889975	4889976	2
Insertion	Chr11	5202905	5202906	2
Insertion	Chr12	13438403	13438404	2
Insertion	Chr12	23521192	23521195	4	LOC_Os12g38320
Insertion	Chr12	9490478	9490479	2
Insertion	Chr2	16468454	16468457	4	LOC_Os02g27810
Insertion	Chr2	16513963	16513964	2
Insertion	Chr2	16777344	16777345	2
Insertion	Chr2	18910158	18910175	18
Insertion	Chr2	30290909	30290911	3	LOC_Os02g49555
Insertion	Chr3	25256470	25256471	2
Insertion	Chr3	25745703	25745705	3
Insertion	Chr3	6934642	6934649	8
Insertion	Chr5	526189	526190	2
Insertion	Chr6	23437640	23437641	2
Insertion	Chr6	8418697	8418698	2
Insertion	Chr7	13284764	13284766	3	LOC_Os07g23510
Insertion	Chr8	19334895	19334896	2
Insertion	Chr8	23883164	23883168	5
Insertion	Chr8	3638362	3638363	2
Insertion	Chr9	10760409	10760414	6
Insertion	Chr9	12064008	12064019	12

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr4	1999093	4355826
Inversion	Chr12	3771197	4125337
Inversion	Chr4	27173898	27181740

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1135525	Chr4	27225816	LOC_Os04g45960
Translocation	Chr12	3768771	Chr6	24624743
Translocation	Chr12	3768791	Chr7	3382563	LOC_Os07g06920
Translocation	Chr12	3771190	Chr7	3382557	LOC_Os07g06920
Translocation	Chr6	24622164	Chr5	5476644
Translocation	Chr6	24624735	Chr5	5476629
Translocation	Chr6	24625513	Chr4	27181736

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