Search Results

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29285224	A-T	HET	INTERGENIC
SBS	Chr2	593864	A-T	HET	INTERGENIC
SBS	Chr2	25507571	G-A	HET	INTERGENIC
SBS	Chr2	31156076	G-A	HET	INTERGENIC
SBS	Chr3	151486	G-C	HOMO	INTERGENIC
SBS	Chr3	774768	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g02270
SBS	Chr3	22196267	C-A	HET	INTERGENIC
SBS	Chr3	26439197	T-A	HET	INTERGENIC
SBS	Chr3	27429748	C-T	HET	INTERGENIC
SBS	Chr3	30215260	T-C	HOMO	INTERGENIC
SBS	Chr3	34297390	G-A	HOMO	INTERGENIC
SBS	Chr4	15357982	C-A	HET	INTERGENIC
SBS	Chr4	15357983	C-T	HET	INTERGENIC
SBS	Chr4	31272806	T-A	HOMO	INTERGENIC
SBS	Chr5	3415147	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g06610
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr7	13658890	A-G	HOMO	INTERGENIC
SBS	Chr7	18160613	A-T	HET	UTR_3_PRIME
SBS	Chr7	26582956	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44520
SBS	Chr7	26582957	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44520
SBS	Chr8	9191549	C-T	HOMO	INTERGENIC
SBS	Chr9	4076991	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5709653	G-C	HOMO	INTERGENIC
SBS	Chr9	18061609	C-G	HET	INTRON
SBS	Chr9	18061610	C-T	HET	INTRON
SBS	Chr10	17406863	G-T	HET	INTERGENIC
SBS	Chr10	17406864	G-T	HET	INTERGENIC
SBS	Chr10	22372015	T-A	HET	INTERGENIC
SBS	Chr11	778173	C-T	HOMO	INTERGENIC
SBS	Chr11	25565984	A-G	HET	INTERGENIC
SBS	Chr12	8728049	T-A	HET	INTRON
SBS	Chr12	8728050	T-C	HET	INTRON
SBS	Chr12	9725374	G-A	HET	INTERGENIC
SBS	Chr12	14234904	G-C	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1339001	1407000	68000	15
Deletion	Chr10	1417001	1879000	462000	65
Deletion	Chr10	1885001	2465000	580000	80
Deletion	Chr8	4801226	4802941	1715
Deletion	Chr7	8388856	8388858	2
Deletion	Chr6	9740118	9740124	6
Deletion	Chr10	11852793	11852809	16
Deletion	Chr9	14543553	14543557	4
Deletion	Chr3	15231712	15231720	8
Deletion	Chr3	15868867	15868869	2
Deletion	Chr7	16152970	16152990	20
Deletion	Chr11	20376926	20376934	8
Deletion	Chr6	24906070	24906085	15
Deletion	Chr4	24922489	24922494	5
Deletion	Chr11	25471730	25471733	3
Deletion	Chr6	28700757	28700761	4
Deletion	Chr1	30842543	30842549	6	LOC_Os01g53680

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	3347906	3347907	2
Insertion	Chr8	234871	234876	6
Insertion	Chr11	23843690	23843690	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1339758	2505071
Inversion	Chr9	4662462	4697485
Inversion	Chr9	4672566	4697493
Inversion	Chr9	5000257	6127341	LOC_Os09g11030
Inversion	Chr9	6125101	6127325	LOC_Os09g11030

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3449819	Chr4	15170581
Translocation	Chr9	4664982	Chr1	8717123
Translocation	Chr9	4672567	Chr1	8717160
Translocation	Chr8	4801249	Chr5	760426	LOC_Os05g02350
Translocation	Chr8	4802940	Chr5	760426	LOC_Os05g02350
Translocation	Chr9	6125104	Chr1	29817223	LOC_Os01g51860
Translocation	Chr9	6126258	Chr1	29817226	2
Translocation	Chr12	26369019	Chr9	4664774

Main menu