Search Results
| Mutant Information |
|---|
| Mutant Name | FN-346 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-346 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37197165 | T-C | HET | INTRON | |
| SBS | Chr2 | 504520 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 11850975 | T-A | HET | INTRON | |
| SBS | Chr2 | 13575651 | G-A | HET | INTRON | |
| SBS | Chr2 | 13763739 | T-G | HET | INTRON | |
| SBS | Chr3 | 3771627 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 8035214 | A-C | HET | INTERGENIC | |
| SBS | Chr4 | 14547660 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 24056559 | A-T | HET | INTRON | |
| SBS | Chr4 | 24196461 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 2299136 | G-C | HET | INTERGENIC | |
| SBS | Chr5 | 3579783 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 4304973 | A-G | HET | INTRON | |
| SBS | Chr5 | 7948010 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 12229043 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 15511240 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 20215430 | C-G | HOMO | INTRON | |
| SBS | Chr9 | 1638140 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr9 | 6321943 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 18842480 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 22057607 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 22142191 | A-G | HET | INTRON | |
| SBS | Chr9 | 22777857 | G-C | HET | INTERGENIC | |
| SBS | Chr10 | 11107195 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 14619522 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 19648869 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 25114441 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 11648761 | G-A | HET | INTRON | |
| SBS | Chr12 | 18907709 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 21869721 | G-T | HET | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 349048 | 349060 | 12 | |
| Deletion | Chr6 | 3260001 | 3284000 | 24000 | 6 |
| Deletion | Chr2 | 4134158 | 4134166 | 8 | |
| Deletion | Chr2 | 4650114 | 4650123 | 9 | |
| Deletion | Chr5 | 5403385 | 5403393 | 8 | |
| Deletion | Chr4 | 5610186 | 5610204 | 18 | |
| Deletion | Chr3 | 5836001 | 5865000 | 29000 | 7 |
| Deletion | Chr8 | 8889631 | 8889634 | 3 | LOC_Os08g14780 |
| Deletion | Chr10 | 12300162 | 12300163 | 1 | |
| Deletion | Chr2 | 12369854 | 12394423 | 24569 | 4 |
| Deletion | Chr11 | 12687231 | 12687240 | 9 | |
| Deletion | Chr2 | 20577135 | 20577141 | 6 | |
| Deletion | Chr1 | 20578827 | 20578831 | 4 | |
| Deletion | Chr2 | 20597283 | 20597290 | 7 | |
| Deletion | Chr9 | 21938994 | 21939001 | 7 | |
| Deletion | Chr9 | 22143520 | 22143536 | 16 | |
| Deletion | Chr5 | 24330654 | 24330656 | 2 | |
| Deletion | Chr7 | 27641473 | 27641477 | 4 | LOC_Os07g46350 |
| Deletion | Chr3 | 33590039 | 33590045 | 6 | |
| Deletion | Chr4 | 35455082 | 35455091 | 9 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 9056951 | 9056954 | 4 | LOC_Os08g15010 |
| Insertion | Chr1 | 9445153 | 9445154 | 2 | |
| Insertion | Chr4 | 24511463 | 24511463 | 1 | |
| Insertion | Chr9 | 17452420 | 17452420 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 502114 | 520116 | LOC_Os12g01850 |
No Translocation