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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1149429	T-A	HOMO	INTRON
SBS	Chr1	5424010	G-A	HET	INTERGENIC
SBS	Chr1	10042455	A-C	HET	INTERGENIC
SBS	Chr1	14395077	G-T	HET	INTRON
SBS	Chr1	28648649	A-G	HOMO	INTERGENIC
SBS	Chr1	32952566	T-A	HET	INTERGENIC
SBS	Chr2	11442440	T-C	HET	INTERGENIC
SBS	Chr2	15798582	A-T	HET	INTERGENIC
SBS	Chr2	15798583	C-T	HET	INTERGENIC
SBS	Chr2	30812931	C-T	HOMO	INTERGENIC
SBS	Chr3	36204771	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g64070
SBS	Chr4	18159110	T-A	HOMO	INTERGENIC
SBS	Chr5	12270422	C-A	HOMO	INTERGENIC
SBS	Chr5	21085116	T-A	HET	INTERGENIC
SBS	Chr6	4301177	A-T	HET	INTERGENIC
SBS	Chr7	20763869	A-C	HET	INTERGENIC
SBS	Chr8	10158455	A-C	HOMO	INTERGENIC
SBS	Chr8	15955390	C-T	HET	INTERGENIC
SBS	Chr8	16684199	A-G	HET	INTERGENIC
SBS	Chr8	21973604	A-G	HET	UTR_3_PRIME
SBS	Chr10	5412339	A-G	HOMO	INTERGENIC
SBS	Chr10	6889447	A-T	HET	INTERGENIC
SBS	Chr10	19854018	C-T	HET	UTR_3_PRIME
SBS	Chr10	20708901	C-T	HET	INTERGENIC
SBS	Chr11	14235109	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g24990
SBS	Chr12	3418560	G-T	HOMO	INTERGENIC
SBS	Chr12	12642644	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22390

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2495092	2495098	6
Deletion	Chr5	2562944	2562945	1
Deletion	Chr4	3948906	3948918	12
Deletion	Chr8	4349337	4349340	3	LOC_Os08g07760
Deletion	Chr9	4733001	4780000	47000	8
Deletion	Chr5	8460001	9856000	1396000	219
Deletion	Chr10	12078210	12078221	11
Deletion	Chr6	12712377	12713358	981	LOC_Os06g21980
Deletion	Chr12	13302001	13341000	39000	5
Deletion	Chr6	13609166	13609167	1
Deletion	Chr7	15043078	15043085	7
Deletion	Chr12	19514638	19514640	2
Deletion	Chr8	21157184	21157197	13
Deletion	Chr4	24426485	24426486	1
Deletion	Chr4	30118885	30118887	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	19680981	19680982	2
Insertion	Chr11	11805773	11805774	2
Insertion	Chr2	18110885	18110887	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4577375	4994590	LOC_Os09g09330
Inversion	Chr9	4779717	4994608	LOC_Os09g09330
Inversion	Chr2	11442487	13825593
Inversion	Chr12	13276575	13917769	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13538875	Chr10	23188787	LOC_Os10g43040
Translocation	Chr12	13539167	Chr6	12712423	LOC_Os06g21980
Translocation	Chr10	23188699	Chr6	12713356	LOC_Os10g43040

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