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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	3361766	G-A	HOMO	INTERGENIC
SBS	Chr11	10278165	G-C	HET	INTERGENIC
SBS	Chr11	7462537	T-A	HET	INTERGENIC
SBS	Chr12	14304402	C-G	HET	INTERGENIC
SBS	Chr12	27446979	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g44280
SBS	Chr2	1024109	T-C	HET	INTRON
SBS	Chr2	20282309	T-A	HET	INTERGENIC
SBS	Chr2	21438299	A-T	HET	INTRON
SBS	Chr2	26166207	T-C	HET	INTERGENIC
SBS	Chr3	13330708	G-A	HOMO	INTRON
SBS	Chr3	15312227	G-T	HET	INTRON
SBS	Chr3	24164803	A-G	HET	INTERGENIC
SBS	Chr3	33381148	A-T	HET	INTERGENIC
SBS	Chr4	12992959	T-C	HET	UTR_3_PRIME
SBS	Chr4	22252478	T-A	HET	INTERGENIC
SBS	Chr4	26774497	C-T	HOMO	INTERGENIC
SBS	Chr4	33678136	T-A	HET	UTR_3_PRIME
SBS	Chr4	6780735	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	6780736	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12280
SBS	Chr5	23899630	T-C	HET	UTR_3_PRIME
SBS	Chr5	23899631	G-A	HET	UTR_3_PRIME
SBS	Chr5	27610556	C-T	HET	INTRON
SBS	Chr5	27732434	G-A	HET	INTERGENIC
SBS	Chr5	4139803	C-A	HET	INTERGENIC
SBS	Chr6	10146362	C-T	HOMO	INTERGENIC
SBS	Chr6	10690790	C-A	HET	UTR_3_PRIME
SBS	Chr6	21946652	A-G	HOMO	INTERGENIC
SBS	Chr6	25347189	A-G	HOMO	UTR_3_PRIME
SBS	Chr6	5999667	A-G	HET	INTERGENIC
SBS	Chr7	5686849	C-T	HET	INTERGENIC
SBS	Chr7	8134420	C-T	HET	INTERGENIC
SBS	Chr9	2238758	A-T	HET	STOP_GAINED	LOC_Os09g04240

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	896497	896510	13
Deletion	Chr10	2064431	2064479	48
Deletion	Chr9	5985231	5985232	1
Deletion	Chr5	6196119	6196162	43
Deletion	Chr11	11604001	11658000	54000	5
Deletion	Chr7	13675933	13675946	13	LOC_Os07g24110
Deletion	Chr1	14205679	14205680	1
Deletion	Chr5	17547663	17547664	1	LOC_Os05g30280
Deletion	Chr5	18258529	18258536	7
Deletion	Chr1	25698443	25698444	1
Deletion	Chr12	26253515	26253516	1
Deletion	Chr4	26362236	26362243	7
Deletion	Chr3	26695455	26695456	1
Deletion	Chr5	27230001	27268000	38000	6
Deletion	Chr5	27419752	27423778	4026	LOC_Os05g47840
Deletion	Chr6	29465248	29465266	18	LOC_Os06g48700
Deletion	Chr3	35698195	35698199	4	LOC_Os03g63150

No Insertion

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7397442	8732074
Inversion	Chr9	7397465	8732092
Inversion	Chr11	11575479	11604121
Inversion	Chr11	11575491	11657977
Inversion	Chr4	33379380	33771830	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	20528295	Chr7	13675115	LOC_Os07g24110
Translocation	Chr9	20529036	Chr7	13404246	2
Translocation	Chr5	27242578	Chr4	33771841	2
Translocation	Chr5	27245942	Chr4	33379371	2

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