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Mutant Information |
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Mutant Name | FN-35 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-35 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 14
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 38493256 | C-G | Homo | INTRON | |
SBS | Chr3 | 6956508 | A-T | Homo | INTRON | |
SBS | Chr3 | 10152029 | G-A | Homo | INTRON | |
SBS | Chr3 | 24632652 | G-T | Homo | INTRON | |
SBS | Chr4 | 10876623 | T-A | Homo | INTRON | |
SBS | Chr4 | 15524837 | T-C | Homo | INTERGENIC | |
SBS | Chr4 | 16805902 | G-A | Homo | INTERGENIC | |
SBS | Chr7 | 10608673 | C-T | Homo | INTERGENIC | |
SBS | Chr8 | 3574304 | C-A | Homo | INTERGENIC | |
SBS | Chr8 | 3574305 | C-A | Homo | INTERGENIC | |
SBS | Chr8 | 21010455 | A-C | Homo | INTERGENIC | |
SBS | Chr9 | 16224551 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 26598328 | G-A | Homo | INTRON | |
SBS | Chr12 | 8806148 | C-T | Homo | INTRON |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 84521 | 84541 | 20 | |
Deletion | Chr6 | 467001 | 511000 | 44000 | 8 |
Deletion | Chr8 | 1148700 | 1148706 | 6 | |
Deletion | Chr7 | 1218519 | 1218520 | 1 | |
Deletion | Chr1 | 3285000 | 3285007 | 7 | LOC_Os01g06920 |
Deletion | Chr12 | 8025545 | 8025546 | 1 | LOC_Os12g14140 |
Deletion | Chr11 | 8454866 | 8454877 | 11 | |
Deletion | Chr10 | 8471103 | 8471106 | 3 | |
Deletion | Chr2 | 8696725 | 8696754 | 29 | |
Deletion | Chr3 | 10148759 | 10148772 | 13 | LOC_Os03g18140 |
Deletion | Chr10 | 12074001 | 12439000 | 365000 | 65 |
Deletion | Chr10 | 12446001 | 12499000 | 53000 | 10 |
Deletion | Chr1 | 20943982 | 20943983 | 1 | |
Deletion | Chr5 | 22196395 | 22196400 | 5 | |
Deletion | Chr2 | 23784126 | 23784128 | 2 | |
Deletion | Chr12 | 24738274 | 24738275 | 1 | |
Deletion | Chr4 | 25681666 | 25681676 | 10 | LOC_Os04g43410 |
Deletion | Chr6 | 26223479 | 26223490 | 11 | |
Deletion | Chr1 | 26790545 | 26790546 | 1 | |
Deletion | Chr2 | 32976058 | 32976061 | 3 | |
Deletion | Chr1 | 40833798 | 40833801 | 3 | LOC_Os01g70500 |
Insertions: 5
No Inversion
No Translocation