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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17825885	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	36048549	G-C	HET	INTERGENIC
SBS	Chr1	5047925	T-A	HET	INTERGENIC
SBS	Chr1	6870862	T-C	HOMO	INTERGENIC
SBS	Chr10	19664550	G-T	HET	INTERGENIC
SBS	Chr11	20148826	C-A	HOMO	INTRON
SBS	Chr12	12115950	C-T	HET	STOP_GAINED	LOC_Os12g21550
SBS	Chr12	19732957	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g32680
SBS	Chr12	22130043	T-C	HET	INTRON
SBS	Chr12	23018948	G-A	HET	INTERGENIC
SBS	Chr12	5308018	G-A	HET	INTERGENIC
SBS	Chr2	2864438	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	2864550	G-A	HOMO	INTERGENIC
SBS	Chr2	2864551	G-A	HOMO	INTERGENIC
SBS	Chr2	2864552	T-A	HOMO	INTERGENIC
SBS	Chr3	1349274	A-C	HET	INTRON
SBS	Chr3	31902772	C-T	HET	INTERGENIC
SBS	Chr3	4253197	C-A	HET	INTERGENIC
SBS	Chr4	13049966	G-C	HET	STOP_GAINED	LOC_Os04g22990
SBS	Chr6	10072266	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g17380
SBS	Chr6	17364850	G-A	HET	INTERGENIC
SBS	Chr6	28492082	C-T	HOMO	INTERGENIC
SBS	Chr6	8706715	G-C	HET	UTR_3_PRIME
SBS	Chr7	26564418	T-G	HOMO	INTERGENIC
SBS	Chr7	27266699	G-A	HOMO	INTERGENIC
SBS	Chr7	27266704	A-C	HOMO	INTERGENIC
SBS	Chr7	6610188	G-A	HET	INTERGENIC
SBS	Chr7	9493257	T-A	HET	INTERGENIC
SBS	Chr8	2156605	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	25324899	T-G	HOMO	INTRON
SBS	Chr8	9017439	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14950
SBS	Chr9	10204571	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g16650
SBS	Chr9	15696270	G-A	HOMO	INTERGENIC
SBS	Chr9	2323845	C-T	HOMO	INTERGENIC
SBS	Chr9	349097	T-A	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2847493	2847494	1
Deletion	Chr1	5604512	5604516	4
Deletion	Chr1	6878010	6878350	340
Deletion	Chr11	7200043	7200044	1
Deletion	Chr6	8726182	8726188	6
Deletion	Chr7	10278920	10278921	1
Deletion	Chr6	12112587	12112589	2
Deletion	Chr12	14828384	14828408	24
Deletion	Chr1	14886001	15087000	201000	27
Deletion	Chr6	16512305	16512314	9
Deletion	Chr1	17385091	17385100	9
Deletion	Chr3	18505552	18505553	1
Deletion	Chr1	18888056	18888060	4
Deletion	Chr9	21133387	21133399	12	LOC_Os09g36619
Deletion	Chr1	25694640	25694641	1
Deletion	Chr7	25770123	25770124	1
Deletion	Chr5	26607580	26607581	1
Deletion	Chr7	28847980	28847987	7
Deletion	Chr1	29573179	29573187	8
Deletion	Chr1	34946001	35116000	170000	29
Deletion	Chr1	35119001	35377000	258000	37
Deletion	Chr1	36467358	36467360	2	LOC_Os01g62945

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	11303223	11303223	1
Insertion	Chr3	1618730	1618730	1
Insertion	Chr3	28227423	28227423	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14211945	14228350	LOC_Os07g24990

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	11518953	Chr4	33507560
Translocation	Chr4	33507554	Chr1	35377049	LOC_Os01g61110

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