Search Results
| Mutant Information |
|---|
| Mutant Name | FN-353 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-353 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7568994 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 35106615 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 36610067 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 18854026 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 19115723 | G-A | HET | INTRON | |
| SBS | Chr2 | 20957265 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr2 | 22450016 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 22450019 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 22450905 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 22450907 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 13953307 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 23052260 | T-G | HET | INTRON | |
| SBS | Chr3 | 23992584 | G-A | HET | INTRON | |
| SBS | Chr3 | 26751357 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 357587 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 6139727 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g11230 |
| SBS | Chr4 | 8265646 | C-T | HET | INTRON | |
| SBS | Chr4 | 27920078 | A-T | HOMO | INTRON | |
| SBS | Chr5 | 852653 | C-A | HET | INTRON | |
| SBS | Chr5 | 13808426 | C-T | HET | INTRON | |
| SBS | Chr5 | 17227409 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 18958457 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 19037076 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 848944 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 10435256 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 11100379 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 20450140 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 17313782 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 16903789 | C-G | HET | INTERGENIC | |
| SBS | Chr10 | 1741558 | A-G | HOMO | INTRON | |
| SBS | Chr10 | 13397231 | C-A | HET | INTRON | |
| SBS | Chr11 | 16638853 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 21691160 | T-G | HET | UTR_3_PRIME | |
| SBS | Chr11 | 24815724 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 3183694 | C-T | HET | INTRON | |
| SBS | Chr12 | 5011983 | T-A | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 154546 | 156693 | 2147 | |
| Deletion | Chr5 | 4892592 | 4915898 | 23306 | 4 |
| Deletion | Chr1 | 6228554 | 6228562 | 8 | |
| Deletion | Chr5 | 7154190 | 7154204 | 14 | |
| Deletion | Chr11 | 11520133 | 11520134 | 1 | |
| Deletion | Chr9 | 11920534 | 11920555 | 21 | LOC_Os09g19930 |
| Deletion | Chr11 | 13469959 | 13469966 | 7 | |
| Deletion | Chr11 | 15255299 | 15255300 | 1 | |
| Deletion | Chr9 | 16138911 | 16138922 | 11 | |
| Deletion | Chr10 | 17300001 | 17483000 | 183000 | 20 |
| Deletion | Chr8 | 19446939 | 19446944 | 5 | LOC_Os08g31440 |
| Deletion | Chr3 | 23137452 | 23137454 | 2 | |
| Deletion | Chr12 | 23494784 | 23494785 | 1 | |
| Deletion | Chr4 | 24496393 | 24496423 | 30 | |
| Deletion | Chr11 | 25172484 | 25172485 | 1 | |
| Deletion | Chr3 | 25382285 | 25382290 | 5 | |
| Deletion | Chr5 | 25911859 | 25911860 | 1 | LOC_Os05g44540 |
| Deletion | Chr2 | 28190639 | 28190702 | 63 | |
| Deletion | Chr2 | 29825267 | 29825275 | 8 | LOC_Os02g48720 |
| Deletion | Chr3 | 35380292 | 35380295 | 3 | LOC_Os03g62480 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 1677692 | 1677695 | 4 | |
| Insertion | Chr11 | 8077998 | 8077998 | 1 | LOC_Os11g14380 |
No Inversion
No Translocation