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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30062284	G-T	HOMO	INTERGENIC
SBS	Chr1	35076899	G-C	HOMO	INTERGENIC
SBS	Chr1	36029134	A-T	HET	INTERGENIC
SBS	Chr10	10084012	C-T	HET	INTERGENIC
SBS	Chr10	13689192	G-A	HET	INTERGENIC
SBS	Chr10	9828687	C-T	HET	INTRON
SBS	Chr11	15424919	C-T	HET	INTERGENIC
SBS	Chr11	21321827	G-A	HET	INTERGENIC
SBS	Chr12	24491887	G-A	HOMO	INTERGENIC
SBS	Chr12	24491888	C-A	HOMO	INTERGENIC
SBS	Chr12	718958	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	718963	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g02280
SBS	Chr2	20491443	C-G	HET	SYNONYMOUS_CODING
SBS	Chr2	9689239	G-A	HET	INTERGENIC
SBS	Chr3	11529530	G-T	HET	INTRON
SBS	Chr3	15299632	T-A	HET	INTERGENIC
SBS	Chr3	25129083	A-G	HET	INTRON
SBS	Chr3	9256899	A-T	HET	INTERGENIC
SBS	Chr4	10542632	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	17441827	C-T	HET	UTR_3_PRIME
SBS	Chr5	23308557	A-T	HET	INTERGENIC
SBS	Chr5	25730800	A-G	HET	INTERGENIC
SBS	Chr5	28350929	G-T	HET	INTERGENIC
SBS	Chr6	10685970	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g18820
SBS	Chr6	28330871	A-G	HET	INTERGENIC
SBS	Chr6	28336196	G-C	HET	INTRON
SBS	Chr7	12316714	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g22024
SBS	Chr7	14927239	T-A	HOMO	INTRON
SBS	Chr8	13146485	C-T	HET	INTRON

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2121364	2121376	12
Deletion	Chr11	2547166	2547182	16
Deletion	Chr5	3340276	3340784	508
Deletion	Chr3	10716013	10716014	1
Deletion	Chr12	13285125	13285135	10
Deletion	Chr7	15432124	15432126	2
Deletion	Chr10	17599203	17599206	3
Deletion	Chr1	19553216	19553224	8
Deletion	Chr7	19654864	19654869	5	LOC_Os07g32870
Deletion	Chr7	21700001	21721000	21000	3
Deletion	Chr6	30170967	30171022	55
Deletion	Chr1	39197105	39197112	7

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	25246934	25246935	2
Insertion	Chr6	7530175	7530175	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	22653279	23323027
Inversion	Chr5	22653299	23323026

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	16331089	Chr2	9957872	LOC_Os09g26880
Translocation	Chr8	19611798	Chr5	3340784	LOC_Os08g31660
Translocation	Chr8	19611801	Chr5	3340292	LOC_Os08g31660
Translocation	Chr7	21720520	Chr5	21789810
Translocation	Chr7	21744560	Chr3	14358084	LOC_Os03g25130
Translocation	Chr5	21793853	Chr3	14358086	LOC_Os03g25130

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