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Mutant Information

Mutant Name	FN-359 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-359 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7011507	G-A	HOMO	INTERGENIC
SBS	Chr1	31660693	T-C	HOMO	INTERGENIC
SBS	Chr1	40876923	T-G	HET	INTERGENIC
SBS	Chr2	3136244	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06280
SBS	Chr4	20718702	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g34190
SBS	Chr4	30053645	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g50800
SBS	Chr5	25934281	T-C	HET	INTRON
SBS	Chr7	4394131	G-A	HOMO	INTERGENIC
SBS	Chr8	1142020	G-A	HET	INTERGENIC
SBS	Chr8	14226019	G-A	HET	INTERGENIC
SBS	Chr8	18273947	G-A	HET	INTERGENIC
SBS	Chr9	9907960	C-A	HET	INTERGENIC
SBS	Chr9	12219737	G-A	HET	INTERGENIC
SBS	Chr9	12219738	C-A	HET	INTERGENIC
SBS	Chr11	8323875	G-A	HET	INTERGENIC
SBS	Chr11	9562665	A-C	HET	INTERGENIC
SBS	Chr11	13012316	C-A	HET	INTERGENIC
SBS	Chr11	13275765	G-A	HET	SYNONYMOUS_CODING

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1392507	1392513	6	LOC_Os04g03270
Deletion	Chr10	3425403	3425409	6
Deletion	Chr7	4448767	4448776	9	LOC_Os07g08630
Deletion	Chr10	5235531	5235536	5
Deletion	Chr3	12019987	12019988	1	LOC_Os03g21110
Deletion	Chr9	12210898	12223883	12985	2
Deletion	Chr12	12297868	12297875	7
Deletion	Chr4	12424374	12424377	3
Deletion	Chr11	14133176	14133184	8
Deletion	Chr11	15123572	15123585	13
Deletion	Chr9	15132733	15132735	2
Deletion	Chr2	27866088	27866095	7
Deletion	Chr4	32912001	32927000	15000	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	409756	409757	2
Insertion	Chr8	10574201	10574202	2
Insertion	Chr1	42302619	42302631	13
Insertion	Chr10	2528641	2528642	2
Insertion	Chr8	1383133	1383133	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9232552	9268161	LOC_Os08g15288
Inversion	Chr1	39419949	39420131

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	12210901	Chr1	3115288
Translocation	Chr9	12223880	Chr1	3115275