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Mutant Information

Mutant Name	FN-36 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-36 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	6437783	T-G	Homo	INTRON
SBS	Chr3	29419488	C-A	Homo	INTERGENIC
SBS	Chr4	20648675	G-T	Homo	INTERGENIC
SBS	Chr5	29318596	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr7	21267579	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g35540
SBS	Chr7	21461588	T-A	Homo	INTERGENIC
SBS	Chr7	25498437	C-A	Homo	INTERGENIC
SBS	Chr7	25498438	C-A	Homo	INTERGENIC
SBS	Chr8	19842948	T-A	Homo	INTRON
SBS	Chr9	4893608	C-T	Homo	INTERGENIC
SBS	Chr9	12576495	G-A	Homo	INTERGENIC
SBS	Chr9	12883502	A-G	Homo	INTERGENIC
SBS	Chr10	12147404	C-T	Homo	INTRON
SBS	Chr12	15943162	T-G	Homo	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1358490	1358494	4	LOC_Os09g02900
Deletion	Chr6	4092001	4140000	48000	5
Deletion	Chr5	6963600	6963644	44	LOC_Os05g12170
Deletion	Chr3	9621495	9621508	13
Deletion	Chr9	12575698	12575760	62
Deletion	Chr1	14678069	14678070	1
Deletion	Chr4	15321699	15321704	5
Deletion	Chr9	17507823	17507835	12	LOC_Os09g28830
Deletion	Chr11	25261243	25261262	19
Deletion	Chr2	25589542	25589543	1
Deletion	Chr2	26043189	26043190	1
Deletion	Chr1	31603627	31603686	59
Deletion	Chr1	36996550	36997103	553
Deletion	Chr1	42191599	42191604	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	6937708	6937708	1
Insertion	Chr2	25802604	25802604	1
Insertion	Chr7	6866898	6866898	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8386442	Chr5	29285957	LOC_Os05g51020
Translocation	Chr10	8391661	Chr5	29285943	LOC_Os05g51020