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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13676223	G-C	HET	INTERGENIC
SBS	Chr1	28124056	G-A	HOMO	INTERGENIC
SBS	Chr1	35576333	G-T	HET	INTERGENIC
SBS	Chr2	21073669	C-T	HOMO	INTERGENIC
SBS	Chr3	17676450	C-T	HOMO	UTR_5_PRIME
SBS	Chr3	18737301	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g32700
SBS	Chr3	27054328	T-A	HET	INTERGENIC
SBS	Chr4	8973960	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16510
SBS	Chr5	1461033	T-A	HOMO	INTERGENIC
SBS	Chr5	18953981	T-C	HET	INTERGENIC
SBS	Chr5	28149306	C-G	HET	INTERGENIC
SBS	Chr6	2093502	T-A	HOMO	INTRON
SBS	Chr6	6168588	T-A	HOMO	INTERGENIC
SBS	Chr6	10034418	C-T	HET	INTERGENIC
SBS	Chr6	13338408	C-T	HOMO	INTERGENIC
SBS	Chr6	14600200	A-T	HET	INTERGENIC
SBS	Chr6	24855245	A-G	HET	INTERGENIC
SBS	Chr7	15944510	T-G	HOMO	INTERGENIC
SBS	Chr7	18776473	T-C	HET	INTERGENIC
SBS	Chr7	19684105	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32920
SBS	Chr8	3956391	A-T	HET	INTERGENIC
SBS	Chr8	5624973	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g09730
SBS	Chr10	12206886	T-C	HET	INTERGENIC
SBS	Chr10	12894397	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	22951632	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	13696411	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24090
SBS	Chr11	13696412	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24090
SBS	Chr12	13493944	A-T	HET	INTRON
SBS	Chr12	14271598	A-C	HET	INTERGENIC
SBS	Chr12	22257509	T-C	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	484757	484767	10
Deletion	Chr9	1122677	1122679	2
Deletion	Chr4	1824158	1824159	1
Deletion	Chr6	2105971	2105977	6
Deletion	Chr3	3134190	3134192	2
Deletion	Chr1	3800108	3800126	18
Deletion	Chr8	4781093	4781097	4	LOC_Os08g08330
Deletion	Chr9	5395031	5395041	10
Deletion	Chr2	5439350	5439362	12
Deletion	Chr9	12488666	12488669	3
Deletion	Chr11	12596526	12596527	1
Deletion	Chr12	14028894	14028897	3	LOC_Os12g24550
Deletion	Chr4	14263621	14263622	1
Deletion	Chr7	15512948	15512949	1
Deletion	Chr6	17268715	17268719	4
Deletion	Chr2	20344695	20344696	1
Deletion	Chr6	22142001	22203000	61000	7
Deletion	Chr5	23232504	23232512	8
Deletion	Chr6	23822776	23822830	54
Deletion	Chr11	25672032	25672035	3	LOC_Os11g42630
Deletion	Chr1	26089777	26089781	4
Deletion	Chr3	31330060	31330064	4
Deletion	Chr4	32586001	32657000	71000	9

No Insertion

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17799381	19154252	LOC_Os07g30150
Inversion	Chr7	18776562	19657028	LOC_Os07g32880
Inversion	Chr7	19154245	19157185
Inversion	Chr7	19157193	19657036	LOC_Os07g32880

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	16382442	Chr4	32611155	2
Translocation	Chr8	27071689	Chr4	32611983	LOC_Os04g54840
Translocation	Chr8	27071706	Chr4	32656547

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