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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8354037	T-A	HET	INTERGENIC
SBS	Chr1	28475146	T-G	HET	INTERGENIC
SBS	Chr1	41008781	C-A	HET	INTRON
SBS	Chr2	5932533	C-T	HET	INTRON
SBS	Chr2	11856170	A-T	HET	SYNONYMOUS_CODING
SBS	Chr2	15649737	A-C	HET	INTERGENIC
SBS	Chr3	1924869	A-G	HET	INTERGENIC
SBS	Chr3	5354242	G-T	HET	INTRON
SBS	Chr3	13951487	G-A	HET	INTERGENIC
SBS	Chr3	32102086	T-C	HET	INTRON
SBS	Chr4	706300	G-A	HET	INTERGENIC
SBS	Chr4	2744668	C-T	HET	INTRON
SBS	Chr4	7171982	C-G	HET	INTRON
SBS	Chr4	7774598	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	8186027	G-C	HET	INTERGENIC
SBS	Chr4	16067134	A-C	HOMO	INTRON
SBS	Chr4	18179098	A-G	HET	INTERGENIC
SBS	Chr5	1498436	T-A	HET	INTRON
SBS	Chr5	19850567	G-A	HOMO	INTERGENIC
SBS	Chr5	19850576	G-C	HOMO	INTERGENIC
SBS	Chr6	1296551	G-A	HET	INTERGENIC
SBS	Chr6	10119011	C-T	HET	INTERGENIC
SBS	Chr7	4071314	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g08040
SBS	Chr7	8735938	C-T	HET	INTERGENIC
SBS	Chr7	15805008	C-G	HET	INTRON
SBS	Chr8	11730970	A-G	HET	INTRON
SBS	Chr8	23199289	T-C	HET	INTERGENIC
SBS	Chr9	7847293	C-T	HOMO	INTERGENIC
SBS	Chr9	8784010	G-A	HOMO	INTERGENIC
SBS	Chr11	8896338	T-A	HOMO	INTERGENIC
SBS	Chr12	6913211	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g12560
SBS	Chr12	6913582	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g12560
SBS	Chr12	10395033	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18080

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	708001	781000	73000	10
Deletion	Chr4	1150277	1150281	4
Deletion	Chr8	1187164	1187170	6
Deletion	Chr3	2090187	2090188	1
Deletion	Chr3	4833841	4834048	207
Deletion	Chr3	6822494	6822495	1
Deletion	Chr8	8309519	8309520	1
Deletion	Chr7	8950001	9891000	941000	129
Deletion	Chr4	11817846	11817855	9	LOC_Os04g21010
Deletion	Chr5	13140892	13140893	1	LOC_Os05g23050
Deletion	Chr2	13769983	13770020	37
Deletion	Chr5	16130918	16130936	18	LOC_Os05g27690
Deletion	Chr12	18858204	18858226	22
Deletion	Chr11	20171033	20171034	1
Deletion	Chr1	23964852	23964853	1
Deletion	Chr3	24743314	24755994	12680	3
Deletion	Chr8	24985503	24985510	7
Deletion	Chr3	31823253	31823254	1
Deletion	Chr3	33560857	33560858	1
Deletion	Chr1	35585069	35585079	10

No Insertion

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1366299	2168784	LOC_Os03g03210
Inversion	Chr3	1366311	2168843	LOC_Os03g03210
Inversion	Chr7	6977644	8500536	LOC_Os07g14850
Inversion	Chr7	8498839	10001698	2
Inversion	Chr7	8795696	8950082
Inversion	Chr7	9918359	10001887
Inversion	Chr3	13917815	24743332

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3437465	Chr7	8498843	LOC_Os07g14850
Translocation	Chr12	6915210	Chr6	14329626	LOC_Os12g12570
Translocation	Chr12	6915212	Chr11	3438914	LOC_Os12g12570
Translocation	Chr12	6915731	Chr7	8500523	LOC_Os07g14850
Translocation	Chr12	6915744	Chr6	14329438
Translocation	Chr7	8795688	Chr3	13917792
Translocation	Chr7	8796044	Chr3	24755966

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