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| Mutant Information |
|---|
| Mutant Name | FN-364 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-364 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 36350361 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 11242544 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 20448761 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 5011551 | C-A | HET | INTRON | |
| SBS | Chr12 | 13046421 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 16242572 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 20141029 | C-T | HET | INTRON | |
| SBS | Chr4 | 4236772 | A-G | HET | INTRON | |
| SBS | Chr5 | 10162649 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 1431902 | A-G | HET | INTRON | |
| SBS | Chr5 | 8331405 | T-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 8331406 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 29578249 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr7 | 14708065 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g25650 |
| SBS | Chr7 | 28437879 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 15963585 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 3627848 | C-T | HET | INTERGENIC |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 923257 | 923267 | 10 | LOC_Os02g02540 |
| Deletion | Chr1 | 1051215 | 1051223 | 8 | |
| Deletion | Chr7 | 8466725 | 8466729 | 4 | |
| Deletion | Chr7 | 8478481 | 8478486 | 5 | |
| Deletion | Chr10 | 10430602 | 10430614 | 12 | LOC_Os10g20650 |
| Deletion | Chr2 | 11439176 | 11439179 | 3 | |
| Deletion | Chr12 | 13627158 | 13627159 | 1 | LOC_Os12g23980 |
| Deletion | Chr6 | 15000903 | 15000920 | 17 | |
| Deletion | Chr8 | 17493353 | 17493354 | 1 | LOC_Os08g28630 |
| Deletion | Chr5 | 22272296 | 22272305 | 9 | |
| Deletion | Chr7 | 28436430 | 28436436 | 6 | LOC_Os07g47540 |
| Deletion | Chr4 | 31121456 | 31121471 | 15 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 14295398 | 14295399 | 2 | |
| Insertion | Chr8 | 15507494 | 15507494 | 1 | |
| Insertion | Chr8 | 26409560 | 26409560 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 13034269 | 13046787 | |
| Inversion | Chr12 | 13212218 | 13442838 | LOC_Os12g23690 |
| Inversion | Chr6 | 28949491 | 29167679 | LOC_Os06g47830 |
| Inversion | Chr6 | 28949971 | 29167692 | LOC_Os06g47830 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 4913538 | Chr10 | 17379131 | |
| Translocation | Chr11 | 5381957 | Chr10 | 21906940 | LOC_Os11g10050 |
| Translocation | Chr11 | 5480010 | Chr6 | 28949504 | 2 |
| Translocation | Chr11 | 5480011 | Chr10 | 17379571 | LOC_Os11g10130 |
| Translocation | Chr12 | 22633754 | Chr11 | 5381971 | LOC_Os11g10050 |
| Translocation | Chr12 | 22633779 | Chr6 | 28949942 | LOC_Os06g47830 |