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Mutant Information |
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Mutant Name | FN-365 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-365 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 20
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11560255 | A-C | HOMO | INTERGENIC | |
SBS | Chr1 | 29148506 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 16164231 | T-C | HET | UTR_3_PRIME | |
SBS | Chr11 | 8531251 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g15130 |
SBS | Chr12 | 5090319 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 22554833 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 23057885 | C-G | HOMO | INTRON | |
SBS | Chr4 | 11615250 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20720 |
SBS | Chr4 | 26512393 | A-T | HET | INTRON | |
SBS | Chr4 | 26512394 | T-C | HET | INTRON | |
SBS | Chr5 | 1878874 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 22486506 | A-T | HET | INTERGENIC | |
SBS | Chr5 | 29655508 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 29655509 | C-A | HOMO | INTERGENIC | |
SBS | Chr6 | 12574668 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 8362232 | T-C | HOMO | INTERGENIC | |
SBS | Chr7 | 13766065 | T-G | HET | INTERGENIC | |
SBS | Chr7 | 15325383 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 15325419 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 610256 | C-A | HET | INTERGENIC |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 2124480 | 2124485 | 5 | LOC_Os03g04550 |
Deletion | Chr12 | 2619845 | 2619846 | 1 | |
Deletion | Chr2 | 6946087 | 6946088 | 1 | |
Deletion | Chr5 | 12106933 | 12106980 | 47 | |
Deletion | Chr7 | 13301001 | 13548000 | 247000 | 39 |
Deletion | Chr4 | 16627813 | 16627839 | 26 | |
Deletion | Chr4 | 16712001 | 16738000 | 26000 | 3 |
Deletion | Chr4 | 16757001 | 16776000 | 19000 | 5 |
Deletion | Chr9 | 21083636 | 21083649 | 13 | LOC_Os09g36550 |
Deletion | Chr6 | 24461843 | 24461848 | 5 | |
Deletion | Chr7 | 25441666 | 25441695 | 29 | LOC_Os07g42510 |
Deletion | Chr11 | 25962985 | 25962987 | 2 | |
Deletion | Chr8 | 26149148 | 26149154 | 6 | |
Deletion | Chr3 | 28265254 | 28265257 | 3 |
No Insertion
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 16646143 | 16712273 | LOC_Os04g28180 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 19770542 | Chr6 | 30593999 | LOC_Os09g33520 |