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| Mutant Information |
|---|
| Mutant Name | FN-366 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-366 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18145248 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 4313159 | C-T | HOMO | INTRON | |
| SBS | Chr10 | 9274482 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 9785387 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 27223615 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 30804880 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 34700937 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 15049931 | G-A | HET | INTRON | |
| SBS | Chr3 | 30774315 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 31346979 | A-G | HET | INTRON | |
| SBS | Chr3 | 439065 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 439066 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 439067 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 495731 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 22013481 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 23443847 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 6876335 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 27677713 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g43910 |
| SBS | Chr8 | 5927713 | G-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 11345886 | G-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 20564720 | A-T | HET | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 555906 | 555908 | 2 | LOC_Os01g02040 |
| Deletion | Chr3 | 1450622 | 1450647 | 25 | LOC_Os03g03400 |
| Deletion | Chr12 | 2455561 | 2455562 | 1 | LOC_Os12g05420 |
| Deletion | Chr1 | 4784010 | 4784012 | 2 | |
| Deletion | Chr10 | 6029488 | 6029496 | 8 | LOC_Os10g10890 |
| Deletion | Chr2 | 6524268 | 6524273 | 5 | |
| Deletion | Chr5 | 6699085 | 6699096 | 11 | |
| Deletion | Chr9 | 11997971 | 11997972 | 1 | |
| Deletion | Chr6 | 16478255 | 16478260 | 5 | LOC_Os06g28880 |
| Deletion | Chr5 | 19347715 | 19347735 | 20 | |
| Deletion | Chr5 | 22573627 | 22573628 | 1 | |
| Deletion | Chr1 | 23638984 | 23638987 | 3 | |
| Deletion | Chr8 | 24054525 | 24054529 | 4 | |
| Deletion | Chr7 | 25503841 | 25503844 | 3 | |
| Deletion | Chr12 | 27282939 | 27282940 | 1 | |
| Deletion | Chr2 | 28258381 | 28258384 | 3 | |
| Deletion | Chr2 | 28642749 | 28642754 | 5 | |
| Deletion | Chr4 | 31551655 | 31551671 | 16 | |
| Deletion | Chr2 | 34916709 | 34916710 | 1 | |
| Deletion | Chr1 | 35186658 | 35186664 | 6 | LOC_Os01g60860 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 25349160 | 25349161 | 2 | |
| Insertion | Chr5 | 805954 | 805954 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 15570001 | 15577422 | LOC_Os12g26600 |
| Inversion | Chr3 | 34493889 | 34696162 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 211713 | Chr3 | 30759412 | |
| Translocation | Chr12 | 4496572 | Chr1 | 27920287 | LOC_Os01g48680 |