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Mutant Information

Mutant Name	FN-368 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-368 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4998884	C-T	HET	INTERGENIC
SBS	Chr1	13932770	T-A	HET	INTERGENIC
SBS	Chr2	929642	T-C	HET	INTRON
SBS	Chr2	27144774	C-T	HET	INTERGENIC
SBS	Chr4	8965765	C-T	HOMO	INTERGENIC
SBS	Chr4	31056015	T-G	HET	INTERGENIC
SBS	Chr5	26369328	A-T	HOMO	INTERGENIC
SBS	Chr6	17757845	G-T	HET	INTERGENIC
SBS	Chr6	25038085	C-T	HET	INTERGENIC
SBS	Chr8	6929315	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11810
SBS	Chr8	8582809	C-T	HET	INTRON
SBS	Chr8	24956704	A-T	HET	INTERGENIC
SBS	Chr10	12906630	G-T	HET	INTERGENIC
SBS	Chr10	20067880	A-T	HOMO	INTRON
SBS	Chr11	2560131	A-C	HET	INTERGENIC
SBS	Chr11	4006617	T-G	HET	INTRON
SBS	Chr11	5201220	C-T	HET	INTERGENIC
SBS	Chr11	15146309	A-G	HET	INTERGENIC
SBS	Chr11	16203498	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	801339	801351	12
Deletion	Chr2	923071	931238	8167	4
Deletion	Chr3	3167640	3167649	9
Deletion	Chr2	4346760	4346804	44
Deletion	Chr8	5426580	5426583	3	LOC_Os08g09350
Deletion	Chr5	6958959	6958978	19
Deletion	Chr12	7617901	7617902	1	LOC_Os12g13570
Deletion	Chr3	7900903	7900907	4	LOC_Os03g14560
Deletion	Chr12	8868874	8868914	40
Deletion	Chr9	12608494	12608499	5
Deletion	Chr9	13571516	13571523	7
Deletion	Chr5	13685738	13685759	21	LOC_Os05g23810
Deletion	Chr3	15628879	15628881	2
Deletion	Chr3	15899018	15899020	2
Deletion	Chr6	17126948	17126963	15
Deletion	Chr8	19393657	19393659	2
Deletion	Chr4	23229792	23229794	2
Deletion	Chr8	25241488	25241495	7	LOC_Os08g39850
Deletion	Chr2	28508542	28508545	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15391796	15391797	2
Insertion	Chr4	3952441	3952445	5
Insertion	Chr2	8412118	8412119	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13543433	14186057	LOC_Os06g23190
Inversion	Chr2	20674443	21234095
Inversion	Chr2	21437574	21557397	LOC_Os02g35660
Inversion	Chr2	21437620	21557412	LOC_Os02g35660

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	12330429	Chr2	929739	LOC_Os02g02560
Translocation	Chr12	15825508	Chr4	19038274
Translocation	Chr12	16162092	Chr2	931238	LOC_Os02g02570