Search Results

Mutant Information

Mutant Name	FN-37 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-37 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35945474	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g62100
SBS	Chr2	19289974	T-C	Homo	INTERGENIC
SBS	Chr2	24008839	T-A	Homo	INTERGENIC
SBS	Chr4	27441010	G-T	Homo	INTERGENIC
SBS	Chr4	27786593	A-G	Homo	INTRON
SBS	Chr5	3705062	T-A	Homo	STOP_GAINED	LOC_Os05g07050
SBS	Chr5	3705063	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	11611044	T-C	Homo	INTRON
SBS	Chr6	3457562	T-A	Homo	INTERGENIC
SBS	Chr8	10770418	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g17610
SBS	Chr11	5439090	T-C	Homo	INTERGENIC
SBS	Chr11	16617092	C-G	Homo	INTRON
SBS	Chr11	20783228	T-A	Homo	INTERGENIC
SBS	Chr11	21857700	G-A	Homo	INTERGENIC
SBS	Chr11	22265055	G-T	Homo	INTRON

Deletions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	6542001	6614000	72000	9
Deletion	Chr9	12808001	12832000	24000	5
Deletion	Chr6	20279163	20279165	2

No Insertion

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6542289	6820836
Inversion	Chr12	6613610	6820846	LOC_Os12g12080
Inversion	Chr8	21198324	21273238	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	12828440	Chr8	21273091