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| Mutant Information |
|---|
| Mutant Name | FN-371 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-371 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6836082 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 14216331 | A-C | HET | INTERGENIC | |
| SBS | Chr10 | 3133473 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 3895448 | C-T | HET | INTRON | |
| SBS | Chr11 | 20733546 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 7274605 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 17383493 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 2504795 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 10158569 | G-A | HOMO | INTRON | |
| SBS | Chr2 | 19259076 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 20526845 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34300 |
| SBS | Chr3 | 10113212 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 18904060 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 6947090 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 9520821 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g17140 |
| SBS | Chr4 | 19086934 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 22130019 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 22230722 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 2361885 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 25502489 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 26436480 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 7279312 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 12372613 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g22140 |
| SBS | Chr7 | 19574399 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g32750 |
| SBS | Chr9 | 16404109 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26980 |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 618024 | 618027 | 3 | |
| Deletion | Chr8 | 3325429 | 3325442 | 13 | |
| Deletion | Chr5 | 5376593 | 5376708 | 115 | |
| Deletion | Chr2 | 6445867 | 6445879 | 12 | |
| Deletion | Chr2 | 7923001 | 8049000 | 126000 | 16 |
| Deletion | Chr6 | 8295479 | 8295490 | 11 | |
| Deletion | Chr6 | 9190001 | 9245000 | 55000 | 9 |
| Deletion | Chr3 | 9223003 | 9223005 | 2 | |
| Deletion | Chr2 | 10651877 | 10653123 | 1246 | LOC_Os02g18330 |
| Deletion | Chr2 | 15279196 | 15279197 | 1 | |
| Deletion | Chr7 | 21865003 | 21865013 | 10 | LOC_Os07g36570 |
| Deletion | Chr12 | 25153001 | 25217000 | 64000 | 9 |
| Deletion | Chr5 | 25981231 | 25981232 | 1 | LOC_Os05g44680 |
| Deletion | Chr5 | 27450267 | 27450270 | 3 | LOC_Os05g47870 |
| Deletion | Chr2 | 28835213 | 28835219 | 6 | |
| Deletion | Chr5 | 29450686 | 29450690 | 4 | |
| Deletion | Chr1 | 37201415 | 37201430 | 15 | |
| Deletion | Chr1 | 37707680 | 37707682 | 2 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 16605987 | 16605987 | 1 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6856091 | Chr2 | 10651911 | 2 |
| Translocation | Chr9 | 16788850 | Chr6 | 15930850 | LOC_Os06g28060 |
| Translocation | Chr9 | 16788856 | Chr6 | 15932792 | LOC_Os06g28060 |