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Mutant Information

Mutant Name	FN-372 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-372 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11789382	C-T	HOMO	INTERGENIC
SBS	Chr10	14104661	T-A	HOMO	INTERGENIC
SBS	Chr11	28967956	G-A	HET	INTERGENIC
SBS	Chr11	404189	G-T	HET	INTRON
SBS	Chr11	8087822	G-A	HOMO	INTERGENIC
SBS	Chr3	10226047	G-C	HET	INTERGENIC
SBS	Chr3	16310635	T-G	HET	INTERGENIC
SBS	Chr3	2893819	G-A	HET	INTERGENIC
SBS	Chr4	30851457	G-A	HOMO	INTERGENIC
SBS	Chr4	31025460	T-G	HOMO	INTERGENIC
SBS	Chr4	31025461	T-C	HOMO	INTERGENIC
SBS	Chr6	28640897	T-A	HOMO	INTRON
SBS	Chr6	3766567	T-G	HET	INTRON
SBS	Chr7	29056836	C-T	HET	INTERGENIC
SBS	Chr7	9746344	A-G	HET	INTRON
SBS	Chr7	9755340	G-T	HET	INTERGENIC
SBS	Chr9	13938408	C-T	HET	INTERGENIC
SBS	Chr9	13938409	A-T	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3642731	3642735	4
Deletion	Chr5	7671555	7671559	4
Deletion	Chr9	8673410	8673412	2	LOC_Os09g14620
Deletion	Chr2	9802549	9802557	8
Deletion	Chr7	10147005	10147014	9
Deletion	Chr11	11047164	11047165	1
Deletion	Chr3	12475254	12475256	2
Deletion	Chr7	15614428	15614430	2
Deletion	Chr2	17254027	17254047	20
Deletion	Chr2	17484826	17484828	2
Deletion	Chr11	20565076	20565081	5
Deletion	Chr6	24199638	24199639	1
Deletion	Chr6	25916433	25916434	1
Deletion	Chr2	27878518	27878526	8
Deletion	Chr1	29469437	29469438	1
Deletion	Chr1	30446681	30446707	26
Deletion	Chr3	32832113	32832121	8	LOC_Os03g57580

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	16479231	16479242	12
Insertion	Chr2	8918038	8918038	1
Insertion	Chr3	29811843	29811843	1
Insertion	Chr4	27654570	27654570	1
Insertion	Chr5	21286688	21286689	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	863886	1715573	LOC_Os04g03810
Inversion	Chr4	1715574	4509894	2

No Translocation