Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-374 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-374 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 13
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37173534 | A-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 26773290 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 14637288 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 10339783 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 22802728 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 28231254 | T-C | HET | INTRON | |
| SBS | Chr4 | 23144813 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 14056109 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 5460951 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 20349655 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 3546968 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 3141128 | A-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr8 | 8470353 | C-A | HET | INTERGENIC |
Deletions: 32
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 366498 | 366500 | 2 | LOC_Os01g01689 |
| Deletion | Chr4 | 1321008 | 1321019 | 11 | |
| Deletion | Chr4 | 1826312 | 1826313 | 1 | |
| Deletion | Chr12 | 2265414 | 2265415 | 1 | |
| Deletion | Chr11 | 3531621 | 3531623 | 2 | |
| Deletion | Chr8 | 5288123 | 5288127 | 4 | |
| Deletion | Chr5 | 6858267 | 6858270 | 3 | |
| Deletion | Chr2 | 7745528 | 7745529 | 1 | LOC_Os02g14150 |
| Deletion | Chr1 | 9502657 | 9502658 | 1 | LOC_Os01g16730 |
| Deletion | Chr1 | 10970963 | 10970965 | 2 | |
| Deletion | Chr2 | 11661599 | 11661603 | 4 | |
| Deletion | Chr2 | 12014229 | 12014231 | 2 | |
| Deletion | Chr2 | 12207337 | 12207341 | 4 | |
| Deletion | Chr2 | 12216655 | 12222030 | 5375 | LOC_Os02g20720 |
| Deletion | Chr3 | 12582694 | 12582697 | 3 | |
| Deletion | Chr2 | 12678113 | 12678114 | 1 | |
| Deletion | Chr5 | 16001495 | 16001497 | 2 | |
| Deletion | Chr4 | 16232765 | 16232770 | 5 | |
| Deletion | Chr7 | 16856265 | 16856267 | 2 | |
| Deletion | Chr6 | 17238062 | 17238065 | 3 | |
| Deletion | Chr10 | 19297282 | 19297287 | 5 | |
| Deletion | Chr4 | 22218969 | 22218983 | 14 | |
| Deletion | Chr12 | 24296703 | 24296704 | 1 | |
| Deletion | Chr8 | 24610662 | 24610663 | 1 | |
| Deletion | Chr8 | 25226578 | 25226580 | 2 | |
| Deletion | Chr7 | 28357971 | 28358259 | 288 | |
| Deletion | Chr6 | 29183845 | 29183854 | 9 | |
| Deletion | Chr4 | 30823681 | 30823686 | 5 | |
| Deletion | Chr3 | 31202869 | 31202872 | 3 | |
| Deletion | Chr1 | 31456838 | 31456840 | 2 | |
| Deletion | Chr1 | 33401010 | 33401011 | 1 | |
| Deletion | Chr3 | 35407890 | 35407892 | 2 | LOC_Os03g62530 |
No Insertion
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 3304064 | 3632620 | LOC_Os01g07010 |
| Inversion | Chr2 | 12010932 | 13092489 | LOC_Os02g20380 |
| Inversion | Chr2 | 12216663 | 13525094 | LOC_Os02g22700 |
| Inversion | Chr2 | 12222022 | 13525084 | LOC_Os02g22700 |
| Inversion | Chr6 | 29436669 | 29625003 | LOC_Os06g48650 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 24947468 | Chr1 | 9818309 | 2 |
| Translocation | Chr7 | 24947490 | Chr1 | 9819217 | 2 |
| Translocation | Chr7 | 24948081 | Chr1 | 9818305 | 2 |
| Translocation | Chr8 | 27136537 | Chr3 | 8253979 |