Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22762748	A-G	HET	INTERGENIC
SBS	Chr1	32747160	T-C	HOMO	INTERGENIC
SBS	Chr1	35114455	G-A	HET	INTERGENIC
SBS	Chr10	12313530	C-T	HOMO	INTERGENIC
SBS	Chr10	15650359	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30130
SBS	Chr10	299975	A-G	HOMO	INTERGENIC
SBS	Chr10	6469053	T-A	HET	INTERGENIC
SBS	Chr11	10767908	G-A	HOMO	INTERGENIC
SBS	Chr11	6512153	C-G	HET	INTERGENIC
SBS	Chr11	9070217	G-A	HET	INTERGENIC
SBS	Chr2	14847043	T-C	HOMO	INTRON
SBS	Chr2	15509351	T-C	HET	INTERGENIC
SBS	Chr2	15637032	A-T	HOMO	STOP_GAINED	LOC_Os02g26630
SBS	Chr2	24237891	T-C	HET	INTRON
SBS	Chr2	27791562	C-T	HET	INTRON
SBS	Chr3	21302434	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g38370
SBS	Chr3	4596525	G-A	HET	INTRON
SBS	Chr4	10158900	C-T	HET	INTERGENIC
SBS	Chr4	13696780	C-T	HET	INTERGENIC
SBS	Chr4	16439510	A-T	HET	INTERGENIC
SBS	Chr4	28853184	G-A	HET	INTERGENIC
SBS	Chr4	8028897	G-A	HET	INTERGENIC
SBS	Chr4	8670056	T-C	HET	INTERGENIC
SBS	Chr5	22136348	C-T	HET	INTERGENIC
SBS	Chr5	27734824	G-C	HET	INTRON
SBS	Chr5	605537	T-C	HOMO	INTERGENIC
SBS	Chr6	14631535	G-A	HET	INTERGENIC
SBS	Chr6	16641227	G-C	HET	INTRON
SBS	Chr6	16917794	T-A	HET	INTERGENIC
SBS	Chr6	28652403	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47260
SBS	Chr7	21074379	C-T	HOMO	INTRON
SBS	Chr8	11860590	G-A	HET	INTRON
SBS	Chr8	2246885	T-C	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3258090	3258091	1
Deletion	Chr10	3971571	3971586	15
Deletion	Chr3	4187156	4187165	9	LOC_Os03g08220
Deletion	Chr8	4302705	4302713	8
Deletion	Chr3	4591840	4591848	8
Deletion	Chr8	6189489	6189490	1
Deletion	Chr5	6702242	6702245	3	LOC_Os05g11790
Deletion	Chr11	9196788	9196791	3	LOC_Os11g16590
Deletion	Chr7	9504001	9633000	129000	12
Deletion	Chr8	10552715	10552717	2
Deletion	Chr6	11948083	11948093	10
Deletion	Chr4	12407001	13296000	889000	131
Deletion	Chr9	14188125	14188796	671	LOC_Os09g23810
Deletion	Chr11	14872773	14872775	2
Deletion	Chr9	15462126	15462137	11
Deletion	Chr9	16035234	16035242	8	LOC_Os09g26530
Deletion	Chr2	20117157	20117167	10
Deletion	Chr3	20138204	20138205	1
Deletion	Chr8	21758064	21758098	34	LOC_Os08g34640
Deletion	Chr6	29660403	29660408	5
Deletion	Chr4	30831199	30831200	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29322201	29322201	1
Insertion	Chr11	2687739	2687739	1	LOC_Os11g05800
Insertion	Chr5	13981567	13981567	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7229191	33506545	LOC_Os01g57960
Inversion	Chr7	9452424	9633215

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	11666687	Chr2	24239062	2
Translocation	Chr5	11975318	Chr2	15223007
Translocation	Chr9	18841267	Chr6	14756631

Main menu