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| Mutant Information |
|---|
| Mutant Name | FN-380 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-380 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23958307 | A-G | HET | INTRON | |
| SBS | Chr1 | 29200734 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 31514168 | T-A | HET | INTRON | |
| SBS | Chr1 | 31929467 | G-C | HET | INTRON | |
| SBS | Chr1 | 41638570 | C-G | HET | INTERGENIC | |
| SBS | Chr1 | 5387588 | G-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 8381621 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 15824395 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 17037626 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 12926799 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 5869680 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 738421 | G-A | HOMO | INTRON | |
| SBS | Chr12 | 10663694 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 8283778 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g14510 |
| SBS | Chr2 | 31013136 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g50790 |
| SBS | Chr2 | 8506439 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 23320938 | A-T | HOMO | STOP_GAINED | LOC_Os03g41970 |
| SBS | Chr4 | 1900901 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g04120 |
| SBS | Chr4 | 30772519 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 3208522 | G-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 14513428 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 29237236 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 29485421 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g49240 |
| SBS | Chr8 | 15349458 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 21731931 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 8218534 | G-A | HET | INTERGENIC |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 354595 | 354600 | 5 | LOC_Os11g01600 |
| Deletion | Chr1 | 7865642 | 7865643 | 1 | |
| Deletion | Chr6 | 8768390 | 8768397 | 7 | |
| Deletion | Chr5 | 12896875 | 12896885 | 10 | LOC_Os05g22730 |
| Deletion | Chr1 | 14038629 | 14038637 | 8 | LOC_Os01g24920 |
| Deletion | Chr11 | 21726594 | 21726597 | 3 | |
| Deletion | Chr3 | 23320941 | 23320943 | 2 | LOC_Os03g41970 |
| Deletion | Chr6 | 24091399 | 24091404 | 5 | LOC_Os06g40450 |
| Deletion | Chr3 | 31563162 | 31563164 | 2 | |
| Deletion | Chr1 | 37191071 | 37191072 | 1 |
No Insertion
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 6688834 | 7075155 | |
| Inversion | Chr4 | 12836653 | 12948663 | LOC_Os04g22850 |
| Inversion | Chr4 | 12836673 | 12948663 | LOC_Os04g22850 |
| Inversion | Chr4 | 17161673 | 17357886 | |
| Inversion | Chr4 | 17163760 | 17357894 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 9523096 | Chr8 | 12910596 | 2 |
| Translocation | Chr3 | 17895964 | Chr1 | 772701 | LOC_Os01g02400 |
| Translocation | Chr3 | 17896208 | Chr1 | 772745 | LOC_Os01g02400 |