Search Results
| Mutant Information |
|---|
| Mutant Name | FN-381 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-381 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29014937 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 42310075 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g72940 |
| SBS | Chr2 | 2126247 | T-A | HET | INTRON | |
| SBS | Chr2 | 20526845 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34300 |
| SBS | Chr3 | 14741045 | G-T | HET | INTRON | |
| SBS | Chr3 | 25475000 | G-C | HET | INTERGENIC | |
| SBS | Chr4 | 18933376 | T-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 23553981 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 23553982 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 26114353 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 26345215 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 28160485 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 28160486 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 15812041 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g27180 |
| SBS | Chr7 | 12499663 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 13354395 | A-T | HOMO | UTR_3_PRIME | |
| SBS | Chr7 | 25900313 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 15478088 | T-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 16326084 | A-G | HOMO | UTR_5_PRIME | |
| SBS | Chr10 | 6064492 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 9980098 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 11711318 | T-A | HOMO | INTRON | |
| SBS | Chr10 | 18571213 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 3658294 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g07260 |
| SBS | Chr11 | 5922840 | T-A | HOMO | INTRON | |
| SBS | Chr12 | 7667731 | T-A | HET | INTRON | |
| SBS | Chr12 | 7667732 | T-A | HET | INTRON |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1720471 | 1720474 | 3 | |
| Deletion | Chr9 | 4472001 | 4575000 | 103000 | 12 |
| Deletion | Chr4 | 5640195 | 5640201 | 6 | LOC_Os04g10400 |
| Deletion | Chr12 | 7683001 | 7722000 | 39000 | 5 |
| Deletion | Chr8 | 13477829 | 13477844 | 15 | |
| Deletion | Chr10 | 14522068 | 14522077 | 9 | |
| Deletion | Chr4 | 21196001 | 21369000 | 173000 | 24 |
| Deletion | Chr1 | 22735318 | 22735326 | 8 | |
| Deletion | Chr3 | 29664225 | 29664226 | 1 | |
| Deletion | Chr3 | 31104245 | 31104248 | 3 | |
| Deletion | Chr1 | 40107058 | 40107060 | 2 | LOC_Os01g69030 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 575571 | 575572 | 2 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 7682620 | Chr3 | 10216149 | LOC_Os12g13660 |
| Translocation | Chr9 | 17343292 | Chr4 | 25855951 | LOC_Os04g43690 |
| Translocation | Chr9 | 17350782 | Chr4 | 25889122 | LOC_Os09g28520 |