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Mutant Information

Mutant Name	FN-382 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-382 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13523377	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24010
SBS	Chr1	31058910	G-A	HET	INTERGENIC
SBS	Chr10	3177977	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	6371449	G-A	HET	INTERGENIC
SBS	Chr11	17139646	G-A	HET	INTRON
SBS	Chr2	27949123	G-C	HOMO	INTERGENIC
SBS	Chr2	3525985	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	8867963	A-C	HOMO	INTERGENIC
SBS	Chr3	7875218	G-A	HET	INTRON
SBS	Chr4	14248663	C-T	HOMO	INTERGENIC
SBS	Chr4	14248674	A-T	HOMO	INTERGENIC
SBS	Chr4	14248675	A-T	HOMO	INTERGENIC
SBS	Chr4	3937447	C-T	HET	INTERGENIC
SBS	Chr6	19687318	C-T	HOMO	INTRON
SBS	Chr7	27738878	A-T	HET	INTERGENIC
SBS	Chr7	8922449	G-A	HET	INTERGENIC
SBS	Chr8	22283469	C-T	HET	INTERGENIC
SBS	Chr8	4540003	G-T	HOMO	INTERGENIC
SBS	Chr8	4545425	T-C	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2735634	2735637	3	LOC_Os08g05250
Deletion	Chr5	3493246	3493247	1	LOC_Os05g06710
Deletion	Chr6	5453393	5453394	1
Deletion	Chr1	6599592	6599600	8
Deletion	Chr3	11415159	11415164	5	LOC_Os03g20190
Deletion	Chr6	13418161	13418171	10	LOC_Os06g22980
Deletion	Chr10	17332882	17332897	15	LOC_Os10g33080
Deletion	Chr5	19249846	19249854	8
Deletion	Chr5	19262145	19262155	10
Deletion	Chr11	24814210	24814213	3
Deletion	Chr4	26504001	26598000	94000	22
Deletion	Chr4	26610001	26727000	117000	25
Deletion	Chr4	28391922	28392002	80
Deletion	Chr2	28793509	28793641	132
Deletion	Chr2	30686726	30686738	12

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	2577742	2577742	1
Insertion	Chr2	3040581	3040581	1
Insertion	Chr2	33103509	33103509	1
Insertion	Chr3	12434713	12434714	2
Insertion	Chr4	10680474	10680474	1	LOC_Os04g19230
Insertion	Chr9	20101915	20101916	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	25651706	26392775	2
Inversion	Chr4	28186245	29386531

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4626448	Chr2	32775945	LOC_Os10g08530
Translocation	Chr10	4637210	Chr2	32775947