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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	13113292	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g25360
SBS	Chr10	18124939	C-T	HET	INTERGENIC
SBS	Chr11	2948812	G-T	HET	INTERGENIC
SBS	Chr12	26454689	A-T	HET	INTERGENIC
SBS	Chr12	3354296	T-A	HET	INTERGENIC
SBS	Chr2	12917374	C-A	HET	INTRON
SBS	Chr2	18775798	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g31290
SBS	Chr2	32317254	G-A	HET	INTERGENIC
SBS	Chr3	23864713	G-A	HET	INTERGENIC
SBS	Chr4	11873591	A-C	HET	INTRON
SBS	Chr4	5779876	T-A	HET	INTERGENIC
SBS	Chr5	13800507	G-A	HET	INTERGENIC
SBS	Chr5	24689804	G-A	HET	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	1340269	A-T	HOMO	INTERGENIC
SBS	Chr6	6635393	C-T	HOMO	INTERGENIC
SBS	Chr7	20333955	C-T	HET	INTERGENIC
SBS	Chr7	26068810	T-A	HOMO	INTERGENIC
SBS	Chr8	8357033	C-T	HET	INTRON
SBS	Chr8	8980280	A-T	HET	INTERGENIC
SBS	Chr9	2112488	A-G	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1289749	1289752	3	LOC_Os06g03380
Deletion	Chr9	1651053	1651057	4
Deletion	Chr1	1673611	1673617	6	LOC_Os01g03914
Deletion	Chr2	3566683	3566695	12	LOC_Os02g06990
Deletion	Chr9	12412212	12412216	4
Deletion	Chr7	12980219	12980242	23
Deletion	Chr10	13113295	13113298	3	LOC_Os10g25360
Deletion	Chr12	21216087	21216092	5
Deletion	Chr5	21630197	21630199	2
Deletion	Chr11	22119204	22119206	2
Deletion	Chr8	22884306	22884314	8

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	28519382	28519383	2
Insertion	Chr4	28552488	28552491	4
Insertion	Chr6	26733349	26733349	1
Insertion	Chr7	6098389	6098389	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10160250	13032794	LOC_Os07g23110
Inversion	Chr7	13032801	14336807	2

No Translocation

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