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| Mutant Information |
|---|
| Mutant Name | FN-386 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-386 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27742150 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 18901630 | A-G | HET | INTRON | |
| SBS | Chr11 | 10667584 | G-A | HET | STOP_GAINED | LOC_Os11g18790 |
| SBS | Chr11 | 2813867 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 21539301 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 25300266 | A-C | HET | INTRON | |
| SBS | Chr4 | 11267763 | T-A | HOMO | UTR_5_PRIME | |
| SBS | Chr4 | 26523671 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 32833542 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 35189879 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 10075010 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 16001062 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 23105222 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 14013198 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g24630 |
| SBS | Chr7 | 6958744 | C-T | HOMO | INTRON | |
| SBS | Chr7 | 7056838 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 15456599 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 17283585 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 20782200 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g36090 |
| SBS | Chr9 | 9236679 | G-C | HET | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1381084 | 1381095 | 11 | LOC_Os02g03400 |
| Deletion | Chr6 | 5608502 | 5608504 | 2 | LOC_Os06g10740 |
| Deletion | Chr10 | 7123110 | 7123112 | 2 | |
| Deletion | Chr2 | 7361327 | 7361334 | 7 | |
| Deletion | Chr2 | 7621968 | 7621990 | 22 | LOC_Os02g13970 |
| Deletion | Chr8 | 7973937 | 7973939 | 2 | |
| Deletion | Chr6 | 8314286 | 8314291 | 5 | LOC_Os06g14740 |
| Deletion | Chr11 | 11969024 | 11969025 | 1 | LOC_Os11g20650 |
| Deletion | Chr9 | 15466404 | 15466411 | 7 | |
| Deletion | Chr5 | 17537745 | 17537746 | 1 | LOC_Os05g30260 |
| Deletion | Chr11 | 19339020 | 19339024 | 4 | |
| Deletion | Chr3 | 20304001 | 20403000 | 99000 | 15 |
| Deletion | Chr3 | 20366549 | 20366561 | 12 | |
| Deletion | Chr5 | 21561970 | 21561993 | 23 | |
| Deletion | Chr4 | 22558145 | 22562075 | 3930 | LOC_Os04g37930 |
| Deletion | Chr11 | 28969348 | 28969351 | 3 | |
| Deletion | Chr4 | 33707046 | 33707054 | 8 | LOC_Os04g56520 |
| Deletion | Chr1 | 37838503 | 37838506 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 16737096 | 16737096 | 1 | |
| Insertion | Chr5 | 6514541 | 6514541 | 1 | |
| Insertion | Chr6 | 4464678 | 4464681 | 4 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 275467 | 1924998 | 2 |
| Inversion | Chr5 | 275481 | 1924994 | 2 |
| Inversion | Chr10 | 10221199 | 10263823 | LOC_Os10g20410 |
| Inversion | Chr3 | 17062207 | 20402810 | LOC_Os03g29940 |
| Inversion | Chr3 | 20129500 | 20303333 | LOC_Os03g36290 |
No Translocation