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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35802816	A-G	HET	INTERGENIC
SBS	Chr2	10199560	T-A	HET	INTRON
SBS	Chr2	11385050	C-T	HET	INTERGENIC
SBS	Chr2	35333395	T-A	HOMO	INTERGENIC
SBS	Chr3	1838424	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	1982034	G-T	HOMO	INTERGENIC
SBS	Chr3	14780742	T-C	HET	INTERGENIC
SBS	Chr3	24100680	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43220
SBS	Chr3	35165614	T-A	HOMO	INTRON
SBS	Chr4	1605980	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	8836905	G-T	HET	INTERGENIC
SBS	Chr4	15325223	C-A	HOMO	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	18655753	G-A	HET	UTR_5_PRIME
SBS	Chr4	19045630	C-T	HET	INTRON
SBS	Chr4	28067131	A-G	HET	UTR_3_PRIME
SBS	Chr4	30957261	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g52120
SBS	Chr5	9010738	T-C	HOMO	INTERGENIC
SBS	Chr5	16533062	G-A	HOMO	INTERGENIC
SBS	Chr5	20369899	T-A	HOMO	INTERGENIC
SBS	Chr5	21738511	T-A	HOMO	INTRON
SBS	Chr6	20211010	G-A	HOMO	INTERGENIC
SBS	Chr6	25778143	G-A	HET	INTERGENIC
SBS	Chr7	1306980	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g03260
SBS	Chr7	2195085	G-A	HET	INTRON
SBS	Chr7	4838978	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g09230
SBS	Chr7	6461197	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11680
SBS	Chr8	21306384	G-T	HET	INTERGENIC
SBS	Chr8	26112672	T-C	HET	INTERGENIC
SBS	Chr9	16937787	G-A	HET	INTERGENIC
SBS	Chr10	5008290	G-A	HET	INTERGENIC
SBS	Chr10	20523490	C-T	HOMO	INTERGENIC
SBS	Chr11	14480752	G-A	HOMO	INTRON
SBS	Chr12	22725457	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37100

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1457423	1457426	3
Deletion	Chr6	3699123	3699128	5
Deletion	Chr12	3710834	3710835	1	LOC_Os12g07480
Deletion	Chr10	5515001	5538000	23000	2
Deletion	Chr7	7157274	7157292	18
Deletion	Chr10	8631737	8631741	4
Deletion	Chr10	9970274	9970281	7
Deletion	Chr9	11181697	11181698	1
Deletion	Chr8	12006001	12135000	129000	19
Deletion	Chr11	14678242	14678258	16
Deletion	Chr8	15550411	15550412	1
Deletion	Chr11	15711586	15711597	11
Deletion	Chr4	21392039	21392045	6
Deletion	Chr1	21869045	21869048	3
Deletion	Chr7	23917304	23917305	1
Deletion	Chr1	34910163	34934929	24766	5
Deletion	Chr1	42100710	42100711	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23120896	23120898	3
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390
Insertion	Chr5	24126885	24126885	1
Insertion	Chr6	7561931	7561931	1
Insertion	Chr7	8186028	8186028	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14630195	14792555	LOC_Os01g26110

No Translocation

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