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Mutant Information

Mutant Name	FN-388 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-388 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24356291	G-A	HOMO	INTRON
SBS	Chr11	1326936	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03460
SBS	Chr11	1340386	A-G	HET	INTRON
SBS	Chr2	10058100	C-G	HOMO	INTERGENIC
SBS	Chr2	9654822	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16940
SBS	Chr3	8628086	G-A	HET	INTRON
SBS	Chr4	13820592	G-C	HET	INTERGENIC
SBS	Chr4	1788479	A-G	HET	INTERGENIC
SBS	Chr4	24148717	G-A	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	26385510	G-T	HOMO	INTERGENIC
SBS	Chr7	26849869	T-C	HOMO	UTR_3_PRIME
SBS	Chr7	6177767	C-T	HET	INTRON
SBS	Chr7	836258	C-T	HOMO	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3949897	3949931	34
Deletion	Chr8	9840779	9840781	2
Deletion	Chr4	10461367	10461372	5
Deletion	Chr6	11651041	11651059	18
Deletion	Chr1	11923001	12043000	120000	16
Deletion	Chr12	12779608	12779618	10	LOC_Os12g22610
Deletion	Chr8	13116683	13116684	1
Deletion	Chr9	13316758	13316759	1
Deletion	Chr11	14014889	14014897	8	LOC_Os11g24560
Deletion	Chr3	14331463	14331471	8	LOC_Os03g25100
Deletion	Chr11	14852607	14852609	2
Deletion	Chr6	17330452	17332171	1719	2
Deletion	Chr5	17630441	17630442	1
Deletion	Chr12	25819831	25819842	11
Deletion	Chr7	26378796	26378799	3
Deletion	Chr1	41179307	41179308	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22497006	22497006	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8519784	8688232	LOC_Os06g15310
Inversion	Chr6	8519798	8693373
Inversion	Chr11	10015405	10020534
Inversion	Chr4	17228563	18029006	LOC_Os04g30210

No Translocation