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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	528629	C-T	HET	INTERGENIC
SBS	Chr1	15883054	G-C	HET	INTRON
SBS	Chr1	16278236	C-G	HET	INTERGENIC
SBS	Chr1	33779982	G-T	HOMO	INTERGENIC
SBS	Chr2	7688418	A-T	HOMO	INTERGENIC
SBS	Chr2	11590604	G-A	HOMO	INTERGENIC
SBS	Chr2	27088884	G-A	HOMO	INTERGENIC
SBS	Chr2	29543925	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g48260
SBS	Chr3	1548138	C-T	HET	INTERGENIC
SBS	Chr4	3957000	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07450
SBS	Chr4	29727263	A-G	HET	INTRON
SBS	Chr5	7003202	A-G	HOMO	INTERGENIC
SBS	Chr5	17543233	C-G	HET	INTRON
SBS	Chr5	17543235	G-T	HET	INTRON
SBS	Chr6	3506415	A-T	HET	INTRON
SBS	Chr6	12315635	A-G	HOMO	INTERGENIC
SBS	Chr6	30786588	A-C	HOMO	INTERGENIC
SBS	Chr7	7853027	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr9	9422503	C-A	HET	UTR_3_PRIME
SBS	Chr10	4317827	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	12427593	A-G	HOMO	INTERGENIC
SBS	Chr10	13769229	C-T	HET	INTERGENIC
SBS	Chr10	13784008	G-A	HET	INTRON
SBS	Chr10	19010219	G-C	HET	INTRON
SBS	Chr10	20093212	A-C	HET	INTRON
SBS	Chr11	1342621	G-T	HOMO	INTRON
SBS	Chr11	3933849	G-T	HOMO	INTERGENIC
SBS	Chr12	24266954	C-T	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	174600	174602	2
Deletion	Chr1	1291613	1291621	8
Deletion	Chr8	1474791	1474797	6
Deletion	Chr8	3239061	3239062	1
Deletion	Chr11	3259891	3259898	7	LOC_Os11g06690
Deletion	Chr4	4358477	4358486	9
Deletion	Chr4	4540224	4540236	12
Deletion	Chr9	5697115	5697117	2	LOC_Os09g10420
Deletion	Chr9	6072242	6072248	6
Deletion	Chr9	6705241	6705252	11
Deletion	Chr5	8426192	8426212	20
Deletion	Chr9	11262821	11262834	13
Deletion	Chr6	11385602	11385608	6	LOC_Os06g19900
Deletion	Chr7	16705030	16705038	8
Deletion	Chr5	17433059	17433061	2
Deletion	Chr10	19240588	19240589	1	LOC_Os10g35990
Deletion	Chr4	20234593	20234607	14	LOC_Os04g33410
Deletion	Chr6	25544817	25544820	3	LOC_Os06g42490
Deletion	Chr6	26550896	26550898	2
Deletion	Chr11	28939001	28965000	26000	7
Deletion	Chr5	29767272	29767290	18
Deletion	Chr1	42738006	42738020	14

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	1512143	1512143	1	LOC_Os11g03820
Insertion	Chr9	21893216	21893224	9	LOC_Os09g37967
Insertion	Chr5	27863457	27863460	4
Insertion	Chr5	29614468	29614471	4
Insertion	Chr2	19730252	19730253	2
Insertion	Chr5	8609638	8609639	2	LOC_Os05g15160
Insertion	Chr7	24313236	24313237	2
Insertion	Chr1	12095083	12095083	1
Insertion	Chr2	4492662	4492662	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	28032233	28190550	LOC_Os01g49060

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	19693426	Chr3	20566849	LOC_Os03g37110
Translocation	Chr10	22581492	Chr1	43153364	LOC_Os10g41999
Translocation	Chr10	22581516	Chr1	43153329	LOC_Os10g41999
Translocation	Chr12	27344054	Chr11	28939303	2

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