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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4539037	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09020
SBS	Chr1	4539038	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	6543466	T-C	HET	INTRON
SBS	Chr1	27632983	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g48220
SBS	Chr1	34771115	C-T	HET	INTRON
SBS	Chr1	36257661	A-T	HET	UTR_3_PRIME
SBS	Chr2	20146861	C-T	HOMO	INTERGENIC
SBS	Chr2	28500411	T-C	HET	INTERGENIC
SBS	Chr2	28851992	A-G	HET	INTERGENIC
SBS	Chr3	25216879	T-C	HET	INTERGENIC
SBS	Chr3	33761579	A-G	HET	INTERGENIC
SBS	Chr4	2043078	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	17339352	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	18186534	T-C	HET	INTERGENIC
SBS	Chr5	19580807	A-T	HOMO	INTERGENIC
SBS	Chr6	12700003	T-C	HOMO	INTERGENIC
SBS	Chr6	14137806	C-T	HOMO	INTERGENIC
SBS	Chr6	25613392	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42590
SBS	Chr7	16519537	C-T	HOMO	UTR_3_PRIME
SBS	Chr7	25440270	C-A	HET	INTERGENIC
SBS	Chr8	2200599	C-G	HET	INTERGENIC
SBS	Chr11	4827422	C-T	HET	INTERGENIC
SBS	Chr11	23800815	A-T	HET	INTERGENIC
SBS	Chr11	23804003	G-C	HET	INTERGENIC
SBS	Chr11	23804588	G-T	HET	INTERGENIC
SBS	Chr12	19977184	G-A	HOMO	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	4038746	4038759	13	LOC_Os02g07750
Deletion	Chr4	4967549	5024006	56457	5
Deletion	Chr3	5180534	5180535	1
Deletion	Chr11	6188442	6188443	1
Deletion	Chr11	7521247	7521251	4
Deletion	Chr12	7737614	7737758	144	LOC_Os12g13720
Deletion	Chr8	10240152	10240153	1
Deletion	Chr1	10279794	10279803	9
Deletion	Chr7	14940311	14940314	3
Deletion	Chr11	16696096	16696100	4	LOC_Os11g28820
Deletion	Chr4	19204150	19204152	2
Deletion	Chr3	19746828	19746834	6
Deletion	Chr8	21415341	21415348	7	LOC_Os08g34160
Deletion	Chr9	22609391	22609399	8
Deletion	Chr3	23154498	23154503	5
Deletion	Chr4	23329001	23514000	185000	27
Deletion	Chr3	23659081	23659092	11
Deletion	Chr11	23895242	23895247	5
Deletion	Chr7	25505906	25505907	1
Deletion	Chr6	27445456	27445474	18
Deletion	Chr5	27972278	27972279	1
Deletion	Chr3	30029165	30029167	2
Deletion	Chr1	37231291	37231305	14

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	16764607	16764608	2
Insertion	Chr5	3640669	3640670	2
Insertion	Chr3	32575446	32575446	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	584537	587785
Inversion	Chr9	11647310	11671430	2
Inversion	Chr9	11655081	11671433	LOC_Os09g19510
Inversion	Chr1	40178538	40715492	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5930449	Chr1	40178535	LOC_Os01g69120
Translocation	Chr8	12910497	Chr1	37582923	2
Translocation	Chr8	12912177	Chr1	37582926	2
Translocation	Chr11	23309423	Chr1	4531384	2
Translocation	Chr11	23309433	Chr1	4530900	2

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