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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29228628	C-T	HET	INTERGENIC
SBS	Chr11	10140633	G-T	HET	INTRON
SBS	Chr11	15180057	G-A	HOMO	INTERGENIC
SBS	Chr11	24406486	G-C	HET	INTERGENIC
SBS	Chr11	7587452	G-A	HET	UTR_5_PRIME
SBS	Chr12	15803273	G-A	HET	INTERGENIC
SBS	Chr12	20756050	C-G	HET	INTERGENIC
SBS	Chr12	21982837	G-C	HOMO	INTERGENIC
SBS	Chr12	4322103	C-T	HOMO	INTERGENIC
SBS	Chr12	7220341	A-G	HET	SYNONYMOUS_CODING
SBS	Chr2	23218132	T-A	HOMO	INTRON
SBS	Chr2	31060365	G-A	HET	INTERGENIC
SBS	Chr3	1509931	C-T	HET	INTERGENIC
SBS	Chr3	8909889	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16150
SBS	Chr4	11117800	C-A	HET	INTERGENIC
SBS	Chr4	12277012	G-T	HOMO	INTERGENIC
SBS	Chr4	19578625	A-C	HOMO	INTERGENIC
SBS	Chr4	34688119	C-T	HOMO	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr6	6551849	G-A	HET	INTERGENIC
SBS	Chr7	16140186	T-A	HET	INTERGENIC
SBS	Chr7	19582254	C-T	HET	INTERGENIC
SBS	Chr7	6543809	A-G	HET	INTERGENIC
SBS	Chr8	1039274	G-C	HET	INTERGENIC
SBS	Chr8	11002897	G-T	HET	INTERGENIC
SBS	Chr8	28069785	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44640
SBS	Chr9	1267433	C-T	HET	INTERGENIC
SBS	Chr9	3220093	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1339718	1339730	12
Deletion	Chr10	3401001	3424000	23000
Deletion	Chr12	4293001	4322000	29000	7
Deletion	Chr12	4734022	4734031	9	LOC_Os12g09060
Deletion	Chr12	4734935	4734971	36
Deletion	Chr3	5596553	5596555	2
Deletion	Chr9	6341497	6341500	3
Deletion	Chr7	7450355	7450356	1	LOC_Os07g12980
Deletion	Chr5	7605240	7605249	9
Deletion	Chr12	8633226	8633239	13
Deletion	Chr5	13250531	13250532	1
Deletion	Chr4	13992270	13992283	13
Deletion	Chr7	16866272	16866277	5
Deletion	Chr2	17616652	17616653	1
Deletion	Chr3	18010261	18010262	1
Deletion	Chr1	19052904	19052905	1
Deletion	Chr10	19654838	19654922	84
Deletion	Chr12	21748190	21748191	1
Deletion	Chr2	21889340	21889341	1
Deletion	Chr3	22078165	22078171	6
Deletion	Chr7	24144354	24144355	1
Deletion	Chr11	25736640	25736645	5	LOC_Os11g42720
Deletion	Chr4	27021835	27021844	9
Deletion	Chr3	27361795	27361796	1
Deletion	Chr1	38003235	38003237	2
Deletion	Chr1	42906790	42906793	3	LOC_Os01g74110

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20436984	20436984	1
Insertion	Chr12	18266414	18266414	1
Insertion	Chr2	12620049	12620049	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	3423001	4323826	LOC_Os10g08011
Inversion	Chr12	4030495	4321656	LOC_Os12g07940
Inversion	Chr7	20331733	22987392	LOC_Os07g38280
Inversion	Chr7	20331785	22987414	LOC_Os07g38280

No Translocation

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