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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-396 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-396 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32431547	G-T	HET	INTERGENIC
SBS	Chr1	8198908	A-T	HET	INTERGENIC
SBS	Chr10	23197687	T-A	HOMO	INTRON
SBS	Chr10	4427752	G-A	HOMO	STOP_GAINED	LOC_Os10g08180
SBS	Chr2	14735881	C-T	HOMO	INTERGENIC
SBS	Chr3	11988939	G-A	HOMO	INTERGENIC
SBS	Chr3	12488945	A-G	HET	INTERGENIC
SBS	Chr3	15828726	G-T	HET	INTRON
SBS	Chr3	28129304	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49420
SBS	Chr4	2885413	T-C	HOMO	INTERGENIC
SBS	Chr4	30725124	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	9803407	C-G	HET	INTERGENIC
SBS	Chr6	15098598	A-C	HOMO	INTERGENIC
SBS	Chr6	21313243	T-C	HOMO	INTERGENIC
SBS	Chr7	10097883	G-T	HET	INTRON
SBS	Chr8	17102651	G-A	HET	INTRON
SBS	Chr9	16596348	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27300
SBS	Chr9	18318986	A-T	HET	INTRON

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2719848	2719878	30
Deletion	Chr8	4484102	4484103	1
Deletion	Chr1	5494642	5494646	4
Deletion	Chr9	9078233	9078234	1
Deletion	Chr5	12440737	12440745	8
Deletion	Chr5	12671119	12671199	80
Deletion	Chr4	16378733	16378739	6	LOC_Os04g27710
Deletion	Chr11	17164738	17164740	2
Deletion	Chr7	17270065	17270069	4	LOC_Os07g29410
Deletion	Chr4	19540620	19540621	1
Deletion	Chr12	20026805	20026809	4
Deletion	Chr3	25809764	25809765	1
Deletion	Chr8	26070170	26070187	17
Deletion	Chr8	26927173	26927174	1	LOC_Os08g42600
Deletion	Chr7	28078662	28078670	8	LOC_Os07g47000

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	1897182	1897183	2
Insertion	Chr8	23611468	23611469	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7463936	Chr3	22447563	LOC_Os03g40400