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| Mutant Information |
|---|
| Mutant Name | FN-397 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-397 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10169662 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 33878396 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 3810264 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr1 | 42958282 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 16440320 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 6598159 | A-T | HOMO | INTRON | |
| SBS | Chr11 | 15833045 | C-G | HET | INTRON | |
| SBS | Chr11 | 4237015 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g08090 |
| SBS | Chr12 | 11564279 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 16407654 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 21823838 | C-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 15477149 | C-G | HOMO | INTRON | |
| SBS | Chr3 | 24462067 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 27842115 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 33244584 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 5698689 | T-A | HET | INTRON | |
| SBS | Chr4 | 17676636 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 23053206 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 2533014 | T-A | HET | INTRON | |
| SBS | Chr5 | 2533016 | G-A | HET | INTRON | |
| SBS | Chr5 | 2862804 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr7 | 27721336 | A-C | HOMO | INTRON | |
| SBS | Chr8 | 12246303 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g20390 |
| SBS | Chr8 | 4733444 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 17559665 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 2711600 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g05040 |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 4070474 | 4070475 | 1 | |
| Deletion | Chr7 | 4478932 | 4478947 | 15 | |
| Deletion | Chr8 | 7657517 | 7657518 | 1 | |
| Deletion | Chr6 | 8555344 | 8555377 | 33 | |
| Deletion | Chr2 | 10518488 | 10518489 | 1 | |
| Deletion | Chr12 | 12361174 | 12361192 | 18 | |
| Deletion | Chr11 | 16112819 | 16112820 | 1 | |
| Deletion | Chr1 | 19717293 | 19717296 | 3 | |
| Deletion | Chr11 | 19995526 | 19995535 | 9 | |
| Deletion | Chr12 | 23560568 | 23560572 | 4 | |
| Deletion | Chr8 | 23799706 | 23799723 | 17 | |
| Deletion | Chr12 | 27112270 | 27112272 | 2 | LOC_Os12g43640 |
| Deletion | Chr8 | 28157347 | 28157354 | 7 | |
| Deletion | Chr5 | 28917304 | 28917331 | 27 | |
| Deletion | Chr7 | 29325623 | 29325653 | 30 | |
| Deletion | Chr7 | 29474340 | 29474343 | 3 | LOC_Os07g49210 |
| Deletion | Chr1 | 32886886 | 32886887 | 1 | LOC_Os01g56930 |
| Deletion | Chr1 | 33311517 | 33311535 | 18 | |
| Deletion | Chr1 | 33401010 | 33401011 | 1 | |
| Deletion | Chr1 | 34431740 | 34431752 | 12 | |
| Deletion | Chr1 | 36988806 | 36988817 | 11 |
No Insertion
No Inversion
No Translocation