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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5814002	T-A	HET	INTERGENIC
SBS	Chr1	7856971	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g14030
SBS	Chr1	8786000	T-A	HET	INTERGENIC
SBS	Chr1	8786002	C-T	HET	INTERGENIC
SBS	Chr11	11974037	C-T	HOMO	INTRON
SBS	Chr11	19053843	C-T	HET	INTERGENIC
SBS	Chr2	11535329	T-A	HET	INTERGENIC
SBS	Chr2	24221230	T-G	HET	INTERGENIC
SBS	Chr2	4801633	A-G	HET	INTRON
SBS	Chr2	986313	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g02660
SBS	Chr3	10308797	T-A	HET	INTERGENIC
SBS	Chr3	15641115	C-G	HET	INTRON
SBS	Chr4	19919992	G-A	HET	INTERGENIC
SBS	Chr4	6557547	G-A	HET	INTERGENIC
SBS	Chr5	11769095	C-T	HET	INTERGENIC
SBS	Chr5	7139870	A-G	HET	INTRON
SBS	Chr5	8103930	G-T	HET	INTERGENIC
SBS	Chr6	12671178	C-T	HET	INTERGENIC
SBS	Chr6	28063149	G-A	HOMO	INTRON
SBS	Chr6	9171772	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g16100
SBS	Chr7	15235444	T-C	HET	INTERGENIC
SBS	Chr7	20622117	G-C	HET	INTERGENIC
SBS	Chr8	18391490	G-C	HOMO	INTERGENIC
SBS	Chr8	23033388	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g36480
SBS	Chr9	14355684	A-T	HET	INTERGENIC
SBS	Chr9	14414829	G-A	HET	INTERGENIC
SBS	Chr9	5451167	G-T	HOMO	INTERGENIC
SBS	Chr9	9572760	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	69516	69524	8
Deletion	Chr12	128001	303000	175000	29
Deletion	Chr9	1609252	1609253	1
Deletion	Chr4	3275780	3275798	18
Deletion	Chr9	8386281	8386295	14
Deletion	Chr10	8516321	8516323	2
Deletion	Chr6	9836839	9836842	3
Deletion	Chr3	13193083	13193090	7
Deletion	Chr1	13444456	13444491	35	LOC_Os01g23890
Deletion	Chr3	14447985	14448011	26
Deletion	Chr8	19685486	19685489	3
Deletion	Chr4	20589482	20589489	7
Deletion	Chr7	20621551	20621568	17
Deletion	Chr11	20763236	20763251	15	LOC_Os11g35430
Deletion	Chr2	21321344	21321345	1
Deletion	Chr11	21797140	21797147	7
Deletion	Chr7	22216079	22216086	7
Deletion	Chr11	23512960	23512975	15
Deletion	Chr5	28516220	28516221	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	26815767	26815768	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	19498231	19774224	LOC_Os09g33520

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	302703	Chr1	29560998	2
Translocation	Chr7	6595827	Chr1	30430108	LOC_Os01g52920

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