Search Nipponbare

Mutant Information

Mutant Name	FN-40 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-40 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 11

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24007303	T-G	Homo	INTERGENIC
SBS	Chr10	10423502	A-C	Homo	INTERGENIC
SBS	Chr10	16707158	A-C	Homo	INTRON
SBS	Chr11	12737004	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g22190
SBS	Chr11	15707972	A-C	Homo	INTRON
SBS	Chr12	4900766	G-A	Homo	INTERGENIC
SBS	Chr3	5386492	C-A	Homo	INTRON
SBS	Chr5	3806895	T-A	Homo	INTERGENIC
SBS	Chr5	8654875	C-T	Homo	INTERGENIC
SBS	Chr6	10484939	T-A	Homo	INTERGENIC
SBS	Chr9	3069544	G-A	Homo	SYNONYMOUS_CODING

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1686083	1686084	1
Deletion	Chr2	18699672	18699675	3
Deletion	Chr1	24841966	24841967	1
Deletion	Chr2	31506528	31506530	2
Deletion	Chr1	33369534	33369535	1	LOC_Os01g57720

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31479258	31479259	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	874846	1665680
Inversion	Chr1	16685870	18886849	LOC_Os01g29780

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	892716	Chr5	3806720
Translocation	Chr8	892723	Chr7	2716660
Translocation	Chr9	5758251	Chr8	1685876
Translocation	Chr9	5758572	Chr7	2769711	LOC_Os07g05750