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Mutant Information |
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Mutant Name | FN-40 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-40 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 11
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 24007303 | T-G | Homo | INTERGENIC | |
SBS | Chr3 | 5386492 | C-A | Homo | INTRON | |
SBS | Chr5 | 3806895 | T-A | Homo | INTERGENIC | |
SBS | Chr5 | 8654875 | C-T | Homo | INTERGENIC | |
SBS | Chr6 | 10484939 | T-A | Homo | INTERGENIC | |
SBS | Chr9 | 3069544 | G-A | Homo | SYNONYMOUS_CODING | |
SBS | Chr10 | 10423502 | A-C | Homo | INTERGENIC | |
SBS | Chr10 | 16707158 | A-C | Homo | INTRON | |
SBS | Chr11 | 12737004 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g22190 |
SBS | Chr11 | 15707972 | A-C | Homo | INTRON | |
SBS | Chr12 | 4900766 | G-A | Homo | INTERGENIC |
Deletions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 1686083 | 1686084 | 1 | |
Deletion | Chr2 | 18699672 | 18699675 | 3 | |
Deletion | Chr1 | 24841966 | 24841967 | 1 | |
Deletion | Chr2 | 31506528 | 31506530 | 2 | |
Deletion | Chr1 | 33369534 | 33369535 | 1 | LOC_Os01g57720 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 31479258 | 31479259 | 2 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 874846 | 1665680 | |
Inversion | Chr1 | 16685870 | 18886849 | LOC_Os01g29780 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 892716 | Chr5 | 3806720 | |
Translocation | Chr8 | 892723 | Chr7 | 2716660 | |
Translocation | Chr9 | 5758251 | Chr8 | 1685876 | |
Translocation | Chr9 | 5758572 | Chr7 | 2769711 | LOC_Os07g05750 |