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| Mutant Information |
|---|
| Mutant Name | FN-401 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-401 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17089600 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 30162565 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 5089721 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 585478 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 19156520 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g35830 |
| SBS | Chr10 | 19156521 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g35830 |
| SBS | Chr11 | 23748331 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g39830 |
| SBS | Chr11 | 8270110 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g14680 |
| SBS | Chr12 | 4236647 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 3579220 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 1356231 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g03200 |
| SBS | Chr3 | 19344795 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 31214314 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 22554804 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 22554805 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 22554806 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 33511067 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 28714530 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 26323932 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 14347814 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 3528595 | G-A | HET | INTERGENIC |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 712658 | 721235 | 8577 | 2 |
| Deletion | Chr3 | 1415989 | 1415999 | 10 | LOC_Os03g03300 |
| Deletion | Chr3 | 1932001 | 1967000 | 35000 | 8 |
| Deletion | Chr11 | 3499001 | 3635000 | 136000 | 20 |
| Deletion | Chr11 | 4064333 | 4064346 | 13 | |
| Deletion | Chr5 | 4672369 | 4672374 | 5 | LOC_Os05g08560 |
| Deletion | Chr2 | 7165931 | 7165936 | 5 | LOC_Os02g13420 |
| Deletion | Chr1 | 9631146 | 9631150 | 4 | |
| Deletion | Chr10 | 10162090 | 10162091 | 1 | |
| Deletion | Chr6 | 10787031 | 10787032 | 1 | |
| Deletion | Chr1 | 13219423 | 13231241 | 11818 | 3 |
| Deletion | Chr11 | 14283134 | 14283141 | 7 | |
| Deletion | Chr11 | 17179332 | 17179336 | 4 | |
| Deletion | Chr11 | 17642869 | 17642874 | 5 | |
| Deletion | Chr11 | 17642877 | 17642881 | 4 | |
| Deletion | Chr2 | 17878545 | 17878546 | 1 | |
| Deletion | Chr9 | 19921483 | 19921492 | 9 | LOC_Os09g33730 |
| Deletion | Chr1 | 21441526 | 21441530 | 4 | |
| Deletion | Chr6 | 23720353 | 23722842 | 2489 | LOC_Os06g39900 |
| Deletion | Chr6 | 25232001 | 25262000 | 30000 | 4 |
| Deletion | Chr7 | 26660229 | 26660231 | 2 | |
| Deletion | Chr4 | 27053538 | 27053548 | 10 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 17865977 | 17865982 | 6 | |
| Insertion | Chr11 | 18804838 | 18804841 | 4 | |
| Insertion | Chr3 | 12144087 | 12144087 | 1 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 8673618 | Chr3 | 1961467 |