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Mutant Information |
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Mutant Name | FN-402 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-402 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 33
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 35101587 | A-C | HOMO | INTERGENIC | |
SBS | Chr3 | 13559330 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 17444796 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 23004701 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 26352683 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 28865047 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 2502323 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05070 |
SBS | Chr4 | 9655638 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 10828703 | A-G | HET | INTRON | |
SBS | Chr6 | 1843670 | T-C | HET | INTERGENIC | |
SBS | Chr6 | 4000703 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 141792 | T-C | HOMO | INTRON | |
SBS | Chr7 | 14939612 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 18462335 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g31190 |
SBS | Chr7 | 18462339 | T-A | HET | SYNONYMOUS_CODING | |
SBS | Chr8 | 1791463 | G-T | HET | INTERGENIC | |
SBS | Chr8 | 8010889 | T-A | HOMO | INTERGENIC | |
SBS | Chr8 | 17979076 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 19888589 | C-A | HET | INTERGENIC | |
SBS | Chr9 | 8258196 | C-T | HET | INTERGENIC | |
SBS | Chr9 | 18670397 | A-G | HET | INTRON | |
SBS | Chr9 | 20023155 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g33920 |
SBS | Chr9 | 22635926 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 5491153 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 20074557 | A-T | HOMO | INTERGENIC | |
SBS | Chr11 | 9451411 | T-A | HET | INTERGENIC | |
SBS | Chr11 | 21081019 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g35890 |
SBS | Chr11 | 21081020 | T-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr11 | 27107655 | C-A | HOMO | INTRON | |
SBS | Chr11 | 28121430 | T-A | HET | SYNONYMOUS_CODING | |
SBS | Chr12 | 1937639 | A-C | HOMO | INTERGENIC | |
SBS | Chr12 | 21339956 | A-C | HET | INTERGENIC | |
SBS | Chr12 | 24050169 | G-A | HET | INTERGENIC |
Deletions: 25
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 169796 | 169806 | 10 | |
Deletion | Chr9 | 1578426 | 1578430 | 4 | |
Deletion | Chr10 | 2842803 | 2842805 | 2 | |
Deletion | Chr8 | 5161224 | 5161228 | 4 | |
Deletion | Chr3 | 5414638 | 5414644 | 6 | |
Deletion | Chr3 | 5621296 | 5621380 | 84 | |
Deletion | Chr8 | 10489469 | 10489487 | 18 | LOC_Os08g17130 |
Deletion | Chr3 | 11767763 | 11767766 | 3 | |
Deletion | Chr5 | 13021902 | 13021907 | 5 | LOC_Os05g22910 |
Deletion | Chr7 | 13775042 | 13775047 | 5 | |
Deletion | Chr12 | 14896301 | 14896339 | 38 | LOC_Os12g25700 |
Deletion | Chr10 | 18196369 | 18196381 | 12 | LOC_Os10g34090 |
Deletion | Chr8 | 19123828 | 19123829 | 1 | |
Deletion | Chr11 | 19200453 | 19200460 | 7 | LOC_Os11g32530 |
Deletion | Chr12 | 19579538 | 19579539 | 1 | |
Deletion | Chr5 | 21365042 | 21365062 | 20 | |
Deletion | Chr1 | 22404001 | 22437000 | 33000 | 7 |
Deletion | Chr10 | 22481114 | 22481119 | 5 | LOC_Os10g41770 |
Deletion | Chr10 | 23146710 | 23146721 | 11 | |
Deletion | Chr2 | 23578173 | 23578176 | 3 | LOC_Os02g39040 |
Deletion | Chr2 | 25021799 | 25021807 | 8 | |
Deletion | Chr1 | 26196584 | 26196585 | 1 | |
Deletion | Chr5 | 26617014 | 26617026 | 12 | |
Deletion | Chr1 | 31251898 | 31251900 | 2 | |
Deletion | Chr1 | 34633878 | 34633879 | 1 |
Insertions: 5
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 14114422 | 15522348 | LOC_Os02g26430 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr2 | 30523113 | Chr1 | 22437417 | LOC_Os01g39780 |
Translocation | Chr2 | 30524036 | Chr1 | 22403646 | LOC_Os01g39720 |
Translocation | Chr3 | 32549115 | Chr2 | 31119521 | |
Translocation | Chr3 | 32568180 | Chr2 | 31119521 | LOC_Os03g57120 |