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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	20074557	A-T	HOMO	INTERGENIC
SBS	Chr10	5491153	C-T	HET	INTERGENIC
SBS	Chr11	21081019	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g35890
SBS	Chr11	21081020	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	27107655	C-A	HOMO	INTRON
SBS	Chr11	28121430	T-A	HET	SYNONYMOUS_CODING
SBS	Chr11	9451411	T-A	HET	INTERGENIC
SBS	Chr12	1937639	A-C	HOMO	INTERGENIC
SBS	Chr12	21339956	A-C	HET	INTERGENIC
SBS	Chr12	24050169	G-A	HET	INTERGENIC
SBS	Chr2	35101587	A-C	HOMO	INTERGENIC
SBS	Chr3	13559330	C-T	HET	INTERGENIC
SBS	Chr3	17444796	C-T	HET	INTERGENIC
SBS	Chr3	23004701	G-A	HET	INTERGENIC
SBS	Chr3	26352683	T-C	HET	INTERGENIC
SBS	Chr3	28865047	G-A	HET	INTERGENIC
SBS	Chr4	10828703	A-G	HET	INTRON
SBS	Chr4	2502323	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05070
SBS	Chr4	9655638	A-G	HET	INTERGENIC
SBS	Chr6	1843670	T-C	HET	INTERGENIC
SBS	Chr6	4000703	C-T	HET	INTERGENIC
SBS	Chr7	141792	T-C	HOMO	INTRON
SBS	Chr7	14939612	G-A	HET	INTERGENIC
SBS	Chr7	18462335	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31190
SBS	Chr7	18462339	T-A	HET	SYNONYMOUS_CODING
SBS	Chr8	1791463	G-T	HET	INTERGENIC
SBS	Chr8	17979076	C-T	HET	INTERGENIC
SBS	Chr8	19888589	C-A	HET	INTERGENIC
SBS	Chr8	8010889	T-A	HOMO	INTERGENIC
SBS	Chr9	18670397	A-G	HET	INTRON
SBS	Chr9	20023155	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g33920
SBS	Chr9	22635926	C-T	HOMO	INTERGENIC
SBS	Chr9	8258196	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	169796	169806	10
Deletion	Chr9	1578426	1578430	4
Deletion	Chr10	2842803	2842805	2
Deletion	Chr8	5161224	5161228	4
Deletion	Chr3	5414638	5414644	6
Deletion	Chr3	5621296	5621380	84
Deletion	Chr8	10489469	10489487	18	LOC_Os08g17130
Deletion	Chr3	11767763	11767766	3
Deletion	Chr5	13021902	13021907	5	LOC_Os05g22910
Deletion	Chr7	13775042	13775047	5
Deletion	Chr12	14896301	14896339	38	LOC_Os12g25700
Deletion	Chr10	18196369	18196381	12	LOC_Os10g34090
Deletion	Chr8	19123828	19123829	1
Deletion	Chr11	19200453	19200460	7	LOC_Os11g32530
Deletion	Chr12	19579538	19579539	1
Deletion	Chr5	21365042	21365062	20
Deletion	Chr1	22404001	22437000	33000	7
Deletion	Chr10	22481114	22481119	5	LOC_Os10g41770
Deletion	Chr10	23146710	23146721	11
Deletion	Chr2	23578173	23578176	3	LOC_Os02g39040
Deletion	Chr2	25021799	25021807	8
Deletion	Chr1	26196584	26196585	1
Deletion	Chr5	26617014	26617026	12
Deletion	Chr1	31251898	31251900	2
Deletion	Chr1	34633878	34633879	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	43134513	43134518	6
Insertion	Chr10	2478261	2478262	2
Insertion	Chr2	25476436	25476436	1
Insertion	Chr2	32550977	32550977	1
Insertion	Chr5	28034317	28034317	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14114422	15522348	LOC_Os02g26430

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	30523113	Chr1	22437417	LOC_Os01g39780
Translocation	Chr2	30524036	Chr1	22403646	LOC_Os01g39720
Translocation	Chr3	32549115	Chr2	31119521
Translocation	Chr3	32568180	Chr2	31119521	LOC_Os03g57120

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