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Mutant Information

Mutant Name	FN-403 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-403 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9474686	G-T	HET	INTERGENIC
SBS	Chr1	9474687	A-T	HET	INTERGENIC
SBS	Chr1	11606405	T-A	HET	INTERGENIC
SBS	Chr1	13309097	T-A	HET	INTERGENIC
SBS	Chr2	6053125	C-T	HET	INTERGENIC
SBS	Chr2	22430239	A-G	HOMO	INTERGENIC
SBS	Chr3	27206127	G-A	HOMO	INTERGENIC
SBS	Chr3	35149387	A-G	HOMO	INTRON
SBS	Chr5	251370	A-C	HOMO	INTERGENIC
SBS	Chr5	7663366	G-A	HOMO	INTERGENIC
SBS	Chr6	11837983	A-G	HET	INTRON
SBS	Chr7	6547030	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11830
SBS	Chr7	11202939	G-A	HET	INTRON
SBS	Chr9	14079646	G-A	HET	INTERGENIC
SBS	Chr9	21925554	C-T	HET	INTRON
SBS	Chr10	1856280	C-T	HET	INTERGENIC
SBS	Chr11	7522345	G-T	HOMO	INTRON
SBS	Chr11	16060939	A-G	HET	SYNONYMOUS_CODING
SBS	Chr11	16901936	C-T	HET	INTERGENIC

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	697851	697858	7
Deletion	Chr6	8078001	8690000	612000	83
Deletion	Chr11	14811894	14811897	3
Deletion	Chr3	15716848	15716853	5
Deletion	Chr8	19160660	19172757	12097	2
Deletion	Chr2	27924029	27934240	10211	LOC_Os02g45850
Deletion	Chr4	31368001	31431000	63000	11
Deletion	Chr1	31866110	31866111	1
Deletion	Chr3	35154593	35154598	5

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	7130481	7130483	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7201570	7491748	LOC_Os01g12950
Inversion	Chr9	13972936	13975488
Inversion	Chr9	13972964	13975504
Inversion	Chr1	18656665	20632042
Inversion	Chr1	19752524	21807648	LOC_Os01g35660

No Translocation