Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-406 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-406 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13783069 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 26825589 | T-A | HET | INTERGENIC | |
| SBS | Chr1 | 26825590 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 27478198 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 18876068 | C-A | HOMO | INTRON | |
| SBS | Chr2 | 25202613 | T-A | HOMO | INTRON | |
| SBS | Chr3 | 2774966 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 34715309 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 9429633 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 32678850 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 9890865 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr4 | 9890866 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr5 | 23859422 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 14208292 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 15533106 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 11079897 | T-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 5887951 | T-C | HET | INTERGENIC |
Deletions: 26
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3719058 | 3719061 | 3 | |
| Deletion | Chr6 | 6739423 | 6739424 | 1 | |
| Deletion | Chr9 | 10266256 | 10266257 | 1 | LOC_Os09g16790 |
| Deletion | Chr1 | 11437643 | 11437661 | 18 | |
| Deletion | Chr8 | 11912470 | 11912472 | 2 | LOC_Os08g19890 |
| Deletion | Chr8 | 12454986 | 12454987 | 1 | |
| Deletion | Chr3 | 12611998 | 12611999 | 1 | LOC_Os03g22010 |
| Deletion | Chr3 | 12614852 | 12614862 | 10 | |
| Deletion | Chr3 | 12933507 | 12933508 | 1 | |
| Deletion | Chr6 | 13039215 | 13039217 | 2 | |
| Deletion | Chr9 | 13541471 | 13541475 | 4 | |
| Deletion | Chr11 | 15219819 | 15219832 | 13 | |
| Deletion | Chr10 | 16089252 | 16089256 | 4 | |
| Deletion | Chr4 | 16650335 | 16650338 | 3 | |
| Deletion | Chr5 | 17505271 | 17505273 | 2 | |
| Deletion | Chr5 | 17594812 | 17594825 | 13 | |
| Deletion | Chr5 | 20065180 | 20065283 | 103 | LOC_Os05g33980 |
| Deletion | Chr3 | 21651809 | 21653135 | 1326 | LOC_Os03g38970 |
| Deletion | Chr3 | 24189715 | 24189717 | 2 | |
| Deletion | Chr12 | 25794008 | 25794018 | 10 | |
| Deletion | Chr1 | 26067735 | 26067749 | 14 | |
| Deletion | Chr6 | 26351077 | 26351078 | 1 | |
| Deletion | Chr6 | 26646700 | 26646703 | 3 | LOC_Os06g44160 |
| Deletion | Chr4 | 32678844 | 32678846 | 2 | |
| Deletion | Chr1 | 40092441 | 40092449 | 8 | |
| Deletion | Chr1 | 42709445 | 42709465 | 20 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 10227563 | 10227564 | 2 | |
| Insertion | Chr10 | 19137577 | 19137577 | 1 | |
| Insertion | Chr4 | 31920391 | 31920392 | 2 | |
| Insertion | Chr9 | 10786503 | 10786506 | 4 |
No Inversion
No Translocation