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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13475673	T-C	HOMO	INTERGENIC
SBS	Chr1	21405761	T-C	HOMO	INTERGENIC
SBS	Chr1	5296555	G-A	HET	INTERGENIC
SBS	Chr1	9920418	T-C	HET	INTRON
SBS	Chr10	3991430	A-C	HET	INTERGENIC
SBS	Chr11	6022025	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	15217496	C-G	HET	INTERGENIC
SBS	Chr12	26433231	A-T	HOMO	INTERGENIC
SBS	Chr2	1864415	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04240
SBS	Chr2	19400863	C-T	HET	INTERGENIC
SBS	Chr2	31356494	C-T	HET	INTERGENIC
SBS	Chr2	34482657	A-G	HET	INTRON
SBS	Chr3	1744911	A-T	HET	INTERGENIC
SBS	Chr3	8095288	T-C	HET	INTERGENIC
SBS	Chr4	565143	C-G	HET	INTERGENIC
SBS	Chr5	10359242	A-G	HOMO	INTERGENIC
SBS	Chr6	11350818	C-T	HOMO	INTERGENIC
SBS	Chr6	13134429	G-A	HET	INTERGENIC
SBS	Chr6	21150611	C-T	HET	INTERGENIC
SBS	Chr6	22657434	G-A	HOMO	INTRON
SBS	Chr6	24606904	T-A	HOMO	INTERGENIC
SBS	Chr7	13694612	C-A	HOMO	INTERGENIC
SBS	Chr7	17451539	T-A	HOMO	INTERGENIC
SBS	Chr7	4969099	T-A	HET	INTERGENIC
SBS	Chr7	8431412	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g14760
SBS	Chr8	18688770	G-A	HOMO	INTERGENIC
SBS	Chr8	213248	C-T	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	202999	203015	16
Deletion	Chr1	498296	498308	12
Deletion	Chr5	1583722	1583732	10	LOC_Os05g03660
Deletion	Chr10	2760001	2950000	190000	25
Deletion	Chr4	2833556	2841744	8188
Deletion	Chr10	2959001	3894000	935000	133
Deletion	Chr7	4008228	4008236	8
Deletion	Chr9	4348548	4348562	14
Deletion	Chr9	5167785	5167790	5	LOC_Os09g09580
Deletion	Chr5	6817015	6817016	1
Deletion	Chr2	7310778	7310779	1	LOC_Os02g13620
Deletion	Chr3	7485016	7485020	4	LOC_Os03g13820
Deletion	Chr2	7517721	7517725	4
Deletion	Chr3	8176559	8176565	6
Deletion	Chr8	8293025	8293031	6
Deletion	Chr11	11342975	11342985	10
Deletion	Chr12	11375609	11375615	6	LOC_Os12g19549
Deletion	Chr3	11429768	11429776	8	LOC_Os03g20230
Deletion	Chr9	12406336	12406342	6
Deletion	Chr12	14919309	14919316	7
Deletion	Chr2	15233063	15233067	4
Deletion	Chr7	15803505	15803510	5	LOC_Os07g27200
Deletion	Chr10	18048001	18114000	66000	5
Deletion	Chr9	18672848	18672861	13	LOC_Os09g31040
Deletion	Chr3	29073200	29073203	3
Deletion	Chr2	35807537	35807550	13	LOC_Os02g58580

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	12704240	12704240	1
Insertion	Chr2	3652504	3652504	1
Insertion	Chr3	22281753	22281768	16	LOC_Os03g40100

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	28264178	29808671	LOC_Os04g47620

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3894360	Chr1	15006898	LOC_Os10g07380
Translocation	Chr10	3906343	Chr1	15006907

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