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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1857998	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g04210
SBS	Chr1	2015679	C-T	HOMO	INTRON
SBS	Chr1	2590346	C-T	HOMO	INTRON
SBS	Chr1	11422319	C-A	HET	INTERGENIC
SBS	Chr1	15963419	C-A	HET	INTERGENIC
SBS	Chr1	36824979	A-T	HET	INTRON
SBS	Chr2	390926	A-G	HET	INTERGENIC
SBS	Chr2	1521477	C-A	HET	INTRON
SBS	Chr2	28149650	A-C	HET	SYNONYMOUS_CODING
SBS	Chr2	30178052	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g49390
SBS	Chr3	9065515	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16430
SBS	Chr3	9065516	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16430
SBS	Chr3	33577503	A-T	HET	INTERGENIC
SBS	Chr4	12497324	G-T	HET	INTERGENIC
SBS	Chr4	19045427	T-A	HOMO	INTRON
SBS	Chr5	14963875	T-A	HET	STOP_LOST	LOC_Os05g25720
SBS	Chr5	18226647	C-T	HET	INTERGENIC
SBS	Chr5	29004962	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50600
SBS	Chr6	29767541	A-G	HOMO	INTERGENIC
SBS	Chr6	29771109	A-G	HOMO	INTRON
SBS	Chr6	29771111	A-T	HOMO	INTRON
SBS	Chr7	2185581	G-A	HET	INTERGENIC
SBS	Chr7	2530624	G-T	HET	INTERGENIC
SBS	Chr7	15942843	C-T	HET	INTERGENIC
SBS	Chr8	19895117	G-T	HET	INTERGENIC
SBS	Chr8	19895118	T-G	HET	INTERGENIC
SBS	Chr9	6751112	C-G	HET	INTERGENIC
SBS	Chr10	12001228	T-A	HOMO	INTERGENIC
SBS	Chr12	8063608	G-A	HOMO	INTERGENIC
SBS	Chr12	13896077	T-C	HOMO	INTRON
SBS	Chr12	25417515	G-C	HOMO	INTRON

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	116856	116857	1
Deletion	Chr11	129608	129612	4
Deletion	Chr10	654079	654083	4
Deletion	Chr5	885567	885576	9	LOC_Os05g02550
Deletion	Chr1	1081427	1081431	4	LOC_Os01g02930
Deletion	Chr7	2506477	2506485	8	LOC_Os07g05440
Deletion	Chr4	4258346	4258365	19
Deletion	Chr12	4835806	4835807	1
Deletion	Chr5	6688065	6688066	1
Deletion	Chr6	7044498	7044507	9	LOC_Os06g12870
Deletion	Chr4	7877144	7877145	1
Deletion	Chr9	10079654	10079809	155
Deletion	Chr9	10079655	10079810	155
Deletion	Chr6	10138541	10138817	276	LOC_Os06g17480
Deletion	Chr8	12384201	12384202	1
Deletion	Chr2	14102905	14102907	2
Deletion	Chr4	14651648	14651655	7
Deletion	Chr8	15166455	15166467	12	LOC_Os08g25010
Deletion	Chr7	18612145	18612186	41	LOC_Os07g31420
Deletion	Chr11	19056033	19056034	1
Deletion	Chr5	21346654	21346657	3
Deletion	Chr3	24467377	24467378	1
Deletion	Chr8	25917388	25917409	21	LOC_Os08g40960
Deletion	Chr12	26189110	26189118	8
Deletion	Chr12	27163347	27163354	7
Deletion	Chr4	27534991	27534992	1
Deletion	Chr3	28591493	28591497	4
Deletion	Chr6	29041017	29041046	29
Deletion	Chr4	32384562	32384570	8	LOC_Os04g54430
Deletion	Chr1	33780725	33780728	3

Insertions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	14175586	14175587	2
Insertion	Chr12	9977598	9977608	11
Insertion	Chr1	11584081	11584088	8
Insertion	Chr5	22078777	22078782	6
Insertion	Chr8	26353245	26353250	6
Insertion	Chr1	6154084	6154087	4
Insertion	Chr1	23745436	23745439	4
Insertion	Chr11	4818876	4818879	4
Insertion	Chr11	28281687	28281690	4
Insertion	Chr4	34730832	34730835	4
Insertion	Chr5	6402287	6402290	4
Insertion	Chr11	23208034	23208036	3
Insertion	Chr4	17630012	17630014	3
Insertion	Chr7	24934517	24934519	3	LOC_Os07g41600
Insertion	Chr1	3341686	3341687	2
Insertion	Chr1	23494213	23494214	2
Insertion	Chr10	3986710	3986711	2
Insertion	Chr11	16919102	16919103	2
Insertion	Chr12	9349145	9349146	2
Insertion	Chr2	16516655	16516656	2
Insertion	Chr2	16607553	16607554	2
Insertion	Chr2	18534196	18534197	2
Insertion	Chr2	26650879	26650880	2
Insertion	Chr3	7620255	7620256	2
Insertion	Chr3	16732248	16732249	2
Insertion	Chr3	25283995	25283996	2
Insertion	Chr5	7120260	7120261	2
Insertion	Chr8	3638362	3638363	2
Insertion	Chr8	8336123	8336124	2
Insertion	Chr8	18164358	18164359	2
Insertion	Chr9	18750952	18750953	2
Insertion	Chr11	23454869	23454869	1
Insertion	Chr2	23138618	23138618	1
Insertion	Chr6	25066086	25066086	1
Insertion	Chr7	9078140	9078140	1
Insertion	Chr7	9965619	9965619	1
Insertion	Chr7	20230947	20230947	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1547562	1686493	LOC_Os05g03620
Inversion	Chr7	13586659	14559752
Inversion	Chr1	37519374	37725591	LOC_Os01g64990

No Translocation

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