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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10943780	G-T	HET	INTERGENIC
SBS	Chr1	13780507	T-C	HET	INTERGENIC
SBS	Chr1	13780513	A-T	HET	INTERGENIC
SBS	Chr1	15486396	C-A	HET	INTRON
SBS	Chr1	17107056	A-T	HET	INTRON
SBS	Chr1	18376534	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g33370
SBS	Chr1	31098056	T-C	HOMO	INTERGENIC
SBS	Chr11	22019466	G-A	HOMO	STOP_GAINED	LOC_Os11g37290
SBS	Chr11	8533468	C-T	HET	INTERGENIC
SBS	Chr2	12729460	G-T	HET	INTERGENIC
SBS	Chr2	3468886	A-G	HET	UTR_3_PRIME
SBS	Chr2	8344704	A-T	HOMO	INTERGENIC
SBS	Chr2	9492216	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g16600
SBS	Chr2	9492218	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	18817260	A-G	HOMO	INTERGENIC
SBS	Chr3	27105821	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47760
SBS	Chr3	28233086	T-C	HET	INTRON
SBS	Chr3	30509984	C-T	HET	INTERGENIC
SBS	Chr4	21215831	G-A	HOMO	UTR_3_PRIME
SBS	Chr4	2286021	C-T	HET	INTERGENIC
SBS	Chr4	34338379	A-G	HET	INTERGENIC
SBS	Chr4	6184693	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	10492316	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	12696242	G-A	HET	INTERGENIC
SBS	Chr5	12696243	C-A	HET	INTERGENIC
SBS	Chr5	27508126	G-A	HET	INTRON
SBS	Chr5	27508128	T-A	HET	INTRON
SBS	Chr5	9662277	C-T	HET	INTRON
SBS	Chr6	10661390	A-T	HOMO	INTERGENIC
SBS	Chr6	140931	G-C	HET	INTERGENIC
SBS	Chr6	8212931	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g14590
SBS	Chr7	7892430	G-A	HET	INTERGENIC
SBS	Chr8	11592499	C-A	HET	INTERGENIC
SBS	Chr8	15588880	C-A	HET	INTERGENIC
SBS	Chr8	5194750	G-A	HOMO	INTERGENIC
SBS	Chr9	20644583	T-A	HET	INTERGENIC
SBS	Chr9	2180782	G-T	HET	INTERGENIC
SBS	Chr9	2180783	A-T	HET	INTERGENIC
SBS	Chr9	261368	G-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	460218	460235	17
Deletion	Chr1	967685	967688	3
Deletion	Chr3	1252392	1252412	20
Deletion	Chr12	2677932	2677939	7
Deletion	Chr2	4168832	4168841	9
Deletion	Chr10	6966001	7008000	42000	6
Deletion	Chr6	7279455	7279456	1
Deletion	Chr8	7608567	7608568	1
Deletion	Chr8	8065325	8065333	8
Deletion	Chr12	8193894	8193904	10
Deletion	Chr6	10564006	10564009	3
Deletion	Chr11	11618466	11618475	9	LOC_Os11g20110
Deletion	Chr12	16357617	16357722	105
Deletion	Chr11	19282698	19282699	1
Deletion	Chr3	21772371	21772377	6
Deletion	Chr12	23057849	23057850	1
Deletion	Chr8	24798578	24798579	1
Deletion	Chr3	26444842	26444852	10
Deletion	Chr6	28017902	28017911	9
Deletion	Chr3	29388538	29388588	50
Deletion	Chr2	29574143	29574149	6	LOC_Os02g48320
Deletion	Chr1	31098463	31098464	1
Deletion	Chr1	33408643	33408668	25
Deletion	Chr3	35295838	35295843	5

No Insertion

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	141356	1582950	LOC_Os06g03930
Inversion	Chr6	141374	1582989	2
Inversion	Chr4	14606774	17125241
Inversion	Chr11	18792781	18987906	LOC_Os11g32160
Inversion	Chr12	23204828	23975605
Inversion	Chr3	25973924	25978876	LOC_Os03g45970
Inversion	Chr3	25973957	25978901	LOC_Os03g45970

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1384924	Chr2	7913690	2
Translocation	Chr9	1446404	Chr4	8961751

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