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Mutant Information

Mutant NameFN-410 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN-410 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 34
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr113475227A-CHETINTERGENIC
SBSChr116382231A-THOMONON_SYNONYMOUS_CODINGLOC_Os01g29230
SBSChr122642952T-CHETINTERGENIC
SBSChr135543315C-THETINTRON
SBSChr142395055C-THETINTRON
SBSChr1015005907G-THETINTERGENIC
SBSChr1019926065A-THOMOINTERGENIC
SBSChr1111917951T-GHOMOINTRON
SBSChr1114974571G-AHETUTR_5_PRIME
SBSChr12456953G-CHOMOINTERGENIC
SBSChr129593258T-CHETINTERGENIC
SBSChr215193096G-AHETNON_SYNONYMOUS_CODINGLOC_Os02g25900
SBSChr218989891C-AHETINTERGENIC
SBSChr226793926C-THETINTERGENIC
SBSChr232137886G-AHETNON_SYNONYMOUS_CODINGLOC_Os02g52520
SBSChr29152060C-THETNON_SYNONYMOUS_CODINGLOC_Os02g16080
SBSChr313510717T-CHETINTERGENIC
SBSChr317865562C-THETNON_SYNONYMOUS_CODINGLOC_Os03g31360
SBSChr318818890C-GHOMOINTERGENIC
SBSChr331042712G-THETINTERGENIC
SBSChr35024961G-AHOMOINTERGENIC
SBSChr423418486A-GHETINTERGENIC
SBSChr514602913G-AHETINTRON
SBSChr522194348A-GHETINTERGENIC
SBSChr612192899A-THETINTERGENIC
SBSChr614393118C-AHETINTERGENIC
SBSChr720056713C-THETSYNONYMOUS_CODING
SBSChr722679347G-THETINTERGENIC
SBSChr77296632C-THOMOINTERGENIC
SBSChr811002016G-AHOMOINTERGENIC
SBSChr817217649A-GHETINTRON
SBSChr824858788G-AHETINTERGENIC
SBSChr91818973T-CHETINTRON
SBSChr96872083C-THETINTERGENIC

Deletions: 31
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr121223455123266692113
DeletionChr4321100132730006200011
DeletionChr93980618398063214
DeletionChr7438941243894131
DeletionChr2497412349741241
DeletionChr356766605677149489
DeletionChr12665956566595661
DeletionChr96811169681118415
DeletionChr47101815710186752
DeletionChr911446392114463964
DeletionChr1124120011278000036800050
DeletionChr2125877561258776610
DeletionChr312627587126275903
DeletionChr1128020011295100014900022
DeletionChr913533979135339856LOC_Os09g22410
DeletionChr413918117139181181
DeletionChr9143988111439882110
DeletionChr714815654148156606
DeletionChr6162221991622224142
DeletionChr1018100476181004771
DeletionChr1218178980181789811
DeletionChr71823708618250694136082
DeletionChr7207918402079185313
DeletionChr721039053210390585
DeletionChr821443282214432831
DeletionChr1219150222191505735
DeletionChr524518527245185369
DeletionChr6262321682623642542572
DeletionChr3290626182906263113
DeletionChr231815344318153506LOC_Os02g51950
DeletionChr132459984324599884

Insertions: 1
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr96600606600612

Inversions: 6
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr422069082743572LOC_Os04g05450
InversionChr422080502743783LOC_Os04g05450
InversionChr4274358132729212
InversionChr427437833211362LOC_Os04g05450
InversionChr7454846952247732
InversionChr7454848352247742

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr42206913Chr230904383
TranslocationChr42208038Chr230904364
TranslocationChr83276268Chr35677139
TranslocationChr83276341Chr35676665
TranslocationChr626232174Chr37311415LOC_Os06g43610
TranslocationChr626236417Chr37311405LOC_Os06g43620