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Mutant Information |
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Mutant Name | FN-410 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-410 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13475227 | A-C | HET | INTERGENIC | |
SBS | Chr1 | 16382231 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g29230 |
SBS | Chr1 | 22642952 | T-C | HET | INTERGENIC | |
SBS | Chr1 | 35543315 | C-T | HET | INTRON | |
SBS | Chr1 | 42395055 | C-T | HET | INTRON | |
SBS | Chr10 | 15005907 | G-T | HET | INTERGENIC | |
SBS | Chr10 | 19926065 | A-T | HOMO | INTERGENIC | |
SBS | Chr11 | 11917951 | T-G | HOMO | INTRON | |
SBS | Chr11 | 14974571 | G-A | HET | UTR_5_PRIME | |
SBS | Chr12 | 456953 | G-C | HOMO | INTERGENIC | |
SBS | Chr12 | 9593258 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 15193096 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g25900 |
SBS | Chr2 | 18989891 | C-A | HET | INTERGENIC | |
SBS | Chr2 | 26793926 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 32137886 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g52520 |
SBS | Chr2 | 9152060 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g16080 |
SBS | Chr3 | 13510717 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 17865562 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g31360 |
SBS | Chr3 | 18818890 | C-G | HOMO | INTERGENIC | |
SBS | Chr3 | 31042712 | G-T | HET | INTERGENIC | |
SBS | Chr3 | 5024961 | G-A | HOMO | INTERGENIC | |
SBS | Chr4 | 23418486 | A-G | HET | INTERGENIC | |
SBS | Chr5 | 14602913 | G-A | HET | INTRON | |
SBS | Chr5 | 22194348 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 12192899 | A-T | HET | INTERGENIC | |
SBS | Chr6 | 14393118 | C-A | HET | INTERGENIC | |
SBS | Chr7 | 20056713 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr7 | 22679347 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 7296632 | C-T | HOMO | INTERGENIC | |
SBS | Chr8 | 11002016 | G-A | HOMO | INTERGENIC | |
SBS | Chr8 | 17217649 | A-G | HET | INTRON | |
SBS | Chr8 | 24858788 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 1818973 | T-C | HET | INTRON | |
SBS | Chr9 | 6872083 | C-T | HET | INTERGENIC |
Deletions: 31
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 1223455 | 1232666 | 9211 | 3 |
Deletion | Chr4 | 3211001 | 3273000 | 62000 | 11 |
Deletion | Chr9 | 3980618 | 3980632 | 14 | |
Deletion | Chr7 | 4389412 | 4389413 | 1 | |
Deletion | Chr2 | 4974123 | 4974124 | 1 | |
Deletion | Chr3 | 5676660 | 5677149 | 489 | |
Deletion | Chr12 | 6659565 | 6659566 | 1 | |
Deletion | Chr9 | 6811169 | 6811184 | 15 | |
Deletion | Chr4 | 7101815 | 7101867 | 52 | |
Deletion | Chr9 | 11446392 | 11446396 | 4 | |
Deletion | Chr1 | 12412001 | 12780000 | 368000 | 50 |
Deletion | Chr2 | 12587756 | 12587766 | 10 | |
Deletion | Chr3 | 12627587 | 12627590 | 3 | |
Deletion | Chr1 | 12802001 | 12951000 | 149000 | 22 |
Deletion | Chr9 | 13533979 | 13533985 | 6 | LOC_Os09g22410 |
Deletion | Chr4 | 13918117 | 13918118 | 1 | |
Deletion | Chr9 | 14398811 | 14398821 | 10 | |
Deletion | Chr7 | 14815654 | 14815660 | 6 | |
Deletion | Chr6 | 16222199 | 16222241 | 42 | |
Deletion | Chr10 | 18100476 | 18100477 | 1 | |
Deletion | Chr12 | 18178980 | 18178981 | 1 | |
Deletion | Chr7 | 18237086 | 18250694 | 13608 | 2 |
Deletion | Chr7 | 20791840 | 20791853 | 13 | |
Deletion | Chr7 | 21039053 | 21039058 | 5 | |
Deletion | Chr8 | 21443282 | 21443283 | 1 | |
Deletion | Chr1 | 21915022 | 21915057 | 35 | |
Deletion | Chr5 | 24518527 | 24518536 | 9 | |
Deletion | Chr6 | 26232168 | 26236425 | 4257 | 2 |
Deletion | Chr3 | 29062618 | 29062631 | 13 | |
Deletion | Chr2 | 31815344 | 31815350 | 6 | LOC_Os02g51950 |
Deletion | Chr1 | 32459984 | 32459988 | 4 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr9 | 660060 | 660061 | 2 |
Inversions: 6
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 2206908 | 2743572 | LOC_Os04g05450 |
Inversion | Chr4 | 2208050 | 2743783 | LOC_Os04g05450 |
Inversion | Chr4 | 2743581 | 3272921 | 2 |
Inversion | Chr4 | 2743783 | 3211362 | LOC_Os04g05450 |
Inversion | Chr7 | 4548469 | 5224773 | 2 |
Inversion | Chr7 | 4548483 | 5224774 | 2 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr4 | 2206913 | Chr2 | 30904383 | |
Translocation | Chr4 | 2208038 | Chr2 | 30904364 | |
Translocation | Chr8 | 3276268 | Chr3 | 5677139 | |
Translocation | Chr8 | 3276341 | Chr3 | 5676665 | |
Translocation | Chr6 | 26232174 | Chr3 | 7311415 | LOC_Os06g43610 |
Translocation | Chr6 | 26236417 | Chr3 | 7311405 | LOC_Os06g43620 |