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Mutant Information

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24963494	C-T	HET	INTERGENIC
SBS	Chr1	4339492	T-A	HET	INTERGENIC
SBS	Chr1	7145307	G-T	HET	INTERGENIC
SBS	Chr10	12574459	C-T	HET	INTERGENIC
SBS	Chr11	1628081	T-A	HET	INTRON
SBS	Chr12	13045669	T-G	HET	INTERGENIC
SBS	Chr2	23660971	G-A	HET	INTERGENIC
SBS	Chr3	29998917	T-A	HET	INTERGENIC
SBS	Chr3	4765734	A-T	HET	INTRON
SBS	Chr4	9357972	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g17064
SBS	Chr4	9608063	A-G	HOMO	INTERGENIC
SBS	Chr5	12105504	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20630
SBS	Chr5	14348702	C-A	HET	INTERGENIC
SBS	Chr7	17360787	C-A	HET	INTERGENIC
SBS	Chr8	20712468	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33220
SBS	Chr8	22817889	A-G	HET	INTERGENIC
SBS	Chr8	3931671	T-A	HOMO	INTRON
SBS	Chr9	3426585	G-T	HET	INTERGENIC
SBS	Chr9	6751556	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11980

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2144255	2144263	8
Deletion	Chr8	4052388	4052417	29
Deletion	Chr4	4735169	4735172	3
Deletion	Chr4	4997770	4997774	4
Deletion	Chr9	5471012	5471014	2
Deletion	Chr6	5923513	5923516	3	LOC_Os06g11300
Deletion	Chr6	5923519	5923523	4	LOC_Os06g11300
Deletion	Chr10	5969001	6131000	162000	25
Deletion	Chr10	6155001	6366000	211000	29
Deletion	Chr4	9293163	9293169	6
Deletion	Chr4	12775584	12775585	1
Deletion	Chr1	15494518	15494521	3
Deletion	Chr4	16287788	16287795	7
Deletion	Chr1	16578707	16578709	2	LOC_Os01g29580
Deletion	Chr5	18221751	18221753	2
Deletion	Chr2	18954672	18954675	3	LOC_Os02g32070
Deletion	Chr1	19144938	19144973	35
Deletion	Chr8	20688081	20688082	1
Deletion	Chr12	25537564	25537565	1	LOC_Os12g41200
Deletion	Chr2	30522991	30522992	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	6160503	6160506	4
Insertion	Chr10	1742093	1742096	4
Insertion	Chr11	14529191	14529194	4
Insertion	Chr2	16822825	16822826	2
Insertion	Chr4	19509057	19509059	3
Insertion	Chr6	18121138	18121147	10	LOC_Os06g31190

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	12357293	13545102	LOC_Os01g24040
Inversion	Chr1	12357305	13545118	LOC_Os01g24040

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	21956041	Chr1	38762305	2
Translocation	Chr3	21957426	Chr1	38762319	LOC_Os01g66740

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	16232879	16234587	1708

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