Search Results

Mutant Information

Mutant Name	FN-42 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-42 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 13

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10387331	C-T	Homo	INTRON
SBS	Chr1	38236873	C-T	Homo	INTRON
SBS	Chr1	38236874	C-T	Homo	INTRON
SBS	Chr3	11894500	G-T	Homo	UTR_3_PRIME
SBS	Chr5	17458875	C-T	Homo	INTERGENIC
SBS	Chr5	17458888	A-T	Homo	INTERGENIC
SBS	Chr5	18001606	T-C	Homo	INTERGENIC
SBS	Chr6	13782336	G-A	Homo	INTERGENIC
SBS	Chr7	7296632	C-T	Homo	INTERGENIC
SBS	Chr7	7823510	G-A	Homo	INTRON
SBS	Chr7	11710457	A-G	Homo	INTERGENIC
SBS	Chr7	26920815	A-G	Homo	INTRON
SBS	Chr11	8168008	G-T	Homo	INTRON

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1270270	1270271	1
Deletion	Chr9	9744476	9744487	11
Deletion	Chr11	21492774	21492777	3	LOC_Os11g36450
Deletion	Chr1	21562569	21562571	2
Deletion	Chr2	22544610	22544631	21
Deletion	Chr3	23452805	23452808	3
Deletion	Chr7	23583023	23583025	2	LOC_Os07g39350
Deletion	Chr4	24809973	24809976	3
Deletion	Chr7	26453081	26453091	10
Deletion	Chr6	26883763	26883774	11
Deletion	Chr12	27349721	27349726	5
Deletion	Chr1	32640841	32640849	8

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	29569938	29569939	2
Insertion	Chr10	21290161	21290161	1
Insertion	Chr2	33662626	33662626	1
Insertion	Chr6	31125907	31125907	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23181105	23654812	2
Inversion	Chr7	23181123	23654983	2

No Translocation