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| Mutant Information |
|---|
| Mutant Name | FN-43 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-43 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 4
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr12 | 10684337 | A-G | Homo | INTRON | |
| SBS | Chr12 | 9726778 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3735534 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3735535 | A-T | Homo | INTERGENIC |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 767803 | 767804 | 1 | |
| Deletion | Chr5 | 3735229 | 3735231 | 2 | LOC_Os05g07090 |
| Deletion | Chr8 | 3916130 | 3916131 | 1 | |
| Deletion | Chr6 | 5793048 | 5793049 | 1 | |
| Deletion | Chr9 | 8379162 | 8379164 | 2 | LOC_Os09g14150 |
| Deletion | Chr2 | 10076720 | 10076721 | 1 | |
| Deletion | Chr2 | 11766354 | 11766359 | 5 | |
| Deletion | Chr12 | 12260885 | 12260918 | 33 | LOC_Os12g21784 |
| Deletion | Chr3 | 13290943 | 13290949 | 6 | LOC_Os03g23020 |
| Deletion | Chr11 | 24832512 | 24832513 | 1 | |
| Deletion | Chr3 | 33196171 | 33196182 | 11 | |
| Deletion | Chr3 | 33368634 | 33368636 | 2 |
No Insertion
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 3884228 | 4332268 | LOC_Os08g06970 |
| Inversion | Chr12 | 4086817 | 12403262 |
No Translocation