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Mutant Information

Mutant Name	FN-44 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-44 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 11

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18137210	A-T	Homo	INTRON
SBS	Chr4	1528263	C-T	Homo	INTERGENIC
SBS	Chr4	29345196	A-G	HET	INTERGENIC
SBS	Chr5	12270422	C-A	Homo	INTERGENIC
SBS	Chr5	16352382	G-A	Homo	INTERGENIC
SBS	Chr6	15810741	C-A	Homo	INTERGENIC
SBS	Chr7	10356416	A-G	Homo	INTERGENIC
SBS	Chr7	12107636	G-A	Homo	INTERGENIC
SBS	Chr7	12466190	T-G	HET	INTERGENIC
SBS	Chr8	13509105	A-G	Homo	INTERGENIC
SBS	Chr9	14633705	C-T	Homo	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2969418	2969419	1
Deletion	Chr7	7840001	7869000	29000	5
Deletion	Chr1	9458842	9458843	1
Deletion	Chr1	9521916	9522089	173
Deletion	Chr3	12058001	12083000	25000	3
Deletion	Chr3	12088001	12139000	51000	7
Deletion	Chr11	14641605	14641606	1
Deletion	Chr6	15684862	15684871	9	LOC_Os06g27700
Deletion	Chr2	21008956	21008967	11
Deletion	Chr4	21422708	21422709	1
Deletion	Chr2	24201841	24201847	6
Deletion	Chr1	24976720	24976721	1
Deletion	Chr2	26252235	26252249	14

No Insertion

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1217217	1438786	2
Inversion	Chr3	1238029	1438777	2
Inversion	Chr1	8726938	8956457
Inversion	Chr1	8726971	8956480
Inversion	Chr3	12057789	12088100	LOC_Os03g21190

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1201340	Chr1	9392112	LOC_Os03g02970
Translocation	Chr3	1217210	Chr1	9392079	LOC_Os03g02980
Translocation	Chr7	7863540	Chr3	12139315
Translocation	Chr6	15612845	Chr1	16478195	LOC_Os01g29390
Translocation	Chr6	16310928	Chr1	16478536	LOC_Os01g29390