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Mutant Information

Mutant Name	FN-45 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-45 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	9615858	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	15730419	A-G	Homo	INTERGENIC
SBS	Chr10	17664309	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g33510
SBS	Chr12	11497928	C-G	HET	INTERGENIC
SBS	Chr12	16278656	G-A	Homo	INTRON

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	535832	535844	12
Deletion	Chr7	1133852	1133854	2	LOC_Os07g03020
Deletion	Chr6	9048019	9048020	1
Deletion	Chr3	9141230	9141236	6
Deletion	Chr9	12842280	12842286	6
Deletion	Chr5	14435047	14435049	2
Deletion	Chr3	17740590	17740593	3
Deletion	Chr4	21258862	21258867	5
Deletion	Chr3	21665170	21665192	22
Deletion	Chr8	21924131	21924141	10
Deletion	Chr9	22168928	22168971	43
Deletion	Chr12	23711001	23765000	54000	11
Deletion	Chr12	23782001	23820000	38000	7
Deletion	Chr3	26905114	26905133	19
Deletion	Chr5	27254949	27254957	8
Deletion	Chr1	32051147	32051149	2
Deletion	Chr1	41383001	41398000	15000	6

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2580941	2580944	4
Insertion	Chr5	11425184	11425184	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16800619	17358455	2
Inversion	Chr10	16800631	17358473	2
Inversion	Chr3	17401106	19042797	LOC_Os03g33290
Inversion	Chr1	41398336	41509733	LOC_Os01g71474

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	288999	Chr8	20141139
Translocation	Chr8	24056521	Chr4	25156349