Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-46 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-46 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 5
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20422844 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 39498708 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g67970 |
| SBS | Chr1 | 39667488 | T-C | Homo | INTRON | |
| SBS | Chr10 | 22267300 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22267301 | T-A | Homo | INTERGENIC |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 2279375 | 2279394 | 19 | LOC_Os06g05130 |
| Deletion | Chr10 | 3053596 | 3053601 | 5 | LOC_Os10g06020 |
| Deletion | Chr2 | 4715728 | 4715735 | 7 | LOC_Os02g09170 |
| Deletion | Chr2 | 22252910 | 22252924 | 14 | |
| Deletion | Chr2 | 25977393 | 25977399 | 6 | |
| Deletion | Chr1 | 31374423 | 31374424 | 1 | |
| Deletion | Chr4 | 31471669 | 31471674 | 5 |
No Insertion
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 3290597 | 3663014 | |
| Inversion | Chr11 | 3290715 | 3663021 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 339811 | Chr6 | 1049403 | LOC_Os07g01540 |
| Translocation | Chr7 | 343625 | Chr6 | 1049300 | LOC_Os07g01540 |